Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C30F8.4a
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Query: C30F8.4a CE25798 locus:kin-32 protein kinase status:Partially_confirmed TR:Q95YD4 protein_id:AAK85457.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 240.8 2e-68 1
DUF339 Domain of unknown function (DUF339) 5.1 4.5 1
W2 eIF4-gamma/eIF5/eIF2-epsilon 4.3 4.4 1
MIF4G MIF4G domain 4.1 4.4 1
Peptidase_C8 Peptidase family C8 3.7 5.2 1
Pox_I1 Poxvirus protein I1 2.5 7.5 1
Morbilli_P Morbillivirus RNA polymerase alpha subun 2.3 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C8 1/1 32 44 .. 1 13 [. 3.7 5.2
MIF4G 1/1 91 112 .. 209 230 .] 4.1 4.4
DUF339 1/1 245 274 .. 108 138 .] 5.1 4.5
Pox_I1 1/1 257 281 .. 288 312 .] 2.5 7.5
Morbilli_P 1/1 347 358 .. 292 303 .] 2.3 9.5
pkinase 1/1 367 621 .. 1 290 [. 240.8 2e-68
W2 1/1 679 691 .. 74 87 .] 4.3 4.4
Alignments of top-scoring domains:
Peptidase_C8: domain 1 of 1, from 32 to 44: score 3.7, E = 5.2
*->lARaIGlStaave<-*
AR IG+S av+
C30F8.4a 32 VARGIGISQVAVA 44
MIF4G: domain 1 of 1, from 91 to 112: score 4.1, E = 4.4
*->epelssrirfmledlielrknk<-*
e +l++r+rfm ++++el++ +
C30F8.4a 91 EIKLEMRMRFMPQSVYELQATD 112
DUF339: domain 1 of 1, from 245 to 274: score 5.1, E = 4.5
*->iaqsnlglmyklgrkfdlsemvallskirkn<-*
+++ gl y+l ++d+s++++ l++i+++
C30F8.4a 245 VVGPHTGLSYRLNERCDSSRLLE-LRTIAEI 274
Pox_I1: domain 1 of 1, from 257 to 281: score 2.5, E = 7.5
*->NEkinvskVVeyLtVstvkiesleE<-*
NE+ + s+ e t+ ++i +e
C30F8.4a 257 NERCDSSRLLELRTIAEITIRKMEN 281
Morbilli_P: domain 1 of 1, from 347 to 358: score 2.3, E = 9.5
*->tasprsqNniEs<-*
t+ p+++Nni s
C30F8.4a 347 TIRPKTPNNIDS 358
pkinase: domain 1 of 1, from 367 to 621: score 240.8, E = 2e-68
*->yelleklGeGsfGkVykakhkd...ktgkiVAvKilkkekesikek.
++l+e +G G fG Vyka+++d +++ VAvK+ k +++ +
C30F8.4a 367 ITLKELIGGGQFGNVYKAVYHDlekDERIAVAVKVCK--TDAEPADt 411
.rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrr
+ +l E +++++++H NI++ligv+ d++++lv+E++++G+L++yl++
C30F8.4a 412 qLILQESSLMRNFRHSNIIQLIGVCV--DQPMWLVLELAPKGELREYLQQ 459
nggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKi
++++l+ + + +++Qi+ l YLHs ++vHRD++++NIL+ ++ vK+
C30F8.4a 460 EKDWLPLRILTLFCSQICDSLVYLHSTRFVHRDIAARNILVCSP-QCVKL 508
aDFGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGvi
aDFGL+r l+ + +++ +++ p ++APE +++r +s ++DvW +Gv
C30F8.4a 509 ADFGLSRALDyDAVYTASRGKLPIKWLAPES-VNYRQFSMASDVWMFGVC 557
LyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridple
++E+++ g P+ + + +
C30F8.4a 558 MWEIFSLG-------------------------VKPWAG-------VTNS 575
elfriikrpglrlplpsncSeelkdLlk.kcLnkDPskRpGsatakeiln
+ +i++ g r+p+p+ c+ +l+ ++++k+++ P+kRp t +i +
C30F8.4a 576 DVIMHIEQ-GSRPPCPEKCPTALYNFIRsKMWAIEPHKRP---TVDQIYA 621
<-*
C30F8.4a - -
W2: domain 1 of 1, from 679 to 691: score 4.3, E = 4.4
*->tWLkeAeEEEseee<-*
+WL e+e++E+e++
C30F8.4a 679 KWL-EQEDDEDEDD 691