Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C32D5.12
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Query: C32D5.12 CE01841 status:Partially_confirmed TR:Q09491 protein_id:AAC46799.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomera 51.2 3.6e-13 2
Epimerase NAD dependent epimerase/dehydratase family 17.4 0.00031 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Epimerase 1/1 4 71 .. 1 82 [. 17.4 0.00031
3Beta_HSD 1/2 2 73 .. 11 105 .. 43.0 6.4e-11
3Beta_HSD 2/2 174 220 .. 245 291 .. 8.3 0.2
Alignments of top-scoring domains:
Epimerase: domain 1 of 1, from 4 to 71: score 17.4, E = 0.00031
*->ILVTGGAGFIGShlvreLlnnygddkVvvLDnLtdyYqyagnearle
+ VTGGAG +G +v +Ll+n + +++ ++D + ++++e+r
C32D5.12 4 VAVTGGAGLVGRYVVQRLLENEQIAEIRIIDRQS----TSRDESRK- 45
vvegnprytFvkGDIcDrdlldkvfaehqpDaViH<-*
+++++ D++Dr l+ +++ D+ViH
C32D5.12 46 -------VKLYQIDLNDRKSLENALRGC--DGVIH 71
3Beta_HSD: domain 1 of 2, from 2 to 73: score 43.0, E = 6.4e-11
*->ysclVTGGgGFlGrhIVreLlregeslqevRvfDvrfspelledssk
y+++VTGG+G +Gr+ V++Ll+ + +e+R++D+ ++ +s+k
C32D5.12 2 YTVAVTGGAGLVGRYVVQRLLENEQ-IAEIRIIDRQSTSRD--ESRK 45
lqvitSGkikyieGDvtDkqdlaaAlqgiSCCTLLDmTLmDdvvIHtA<-
++ + D++D l++Al+g d vIH A
C32D5.12 46 VKLY--------QIDLNDRKSLENALRGC------------DGVIHCA 73
*
C32D5.12 - -
3Beta_HSD: domain 2 of 2, from 174 to 220: score 8.3, E = 0.2
*->LRPagIfGeGdqflvpflrqlvknGlakfriGdknalsdrVYVgNVA
LRP++++G G +++++l +n f +G++ + ++Y+gN+A
C32D5.12 174 LRPTFVYGLGKSKKIDTIKELILNSALPFVTGERRGMHQFIYAGNLA 220
<-*
C32D5.12 - -