hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C32D5.10
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Query:  C32D5.10  CE29688    status:Partially_confirmed SW:Q09268 protein_id:AAC46798.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
zf-C3HC4        Zinc finger, C3HC4 type (RING finger)    27.8    5.1e-09   1
chromo          'chromo' (CHRromatin Organization MOd     9.6       0.26   1
Transglutamin_N Transglutaminase family                   6.5          1   1
FYVE            FYVE zinc finger                          4.5        7.8   1
Peptidase_M16_C Peptidase M16 inactive domain             3.5        8.9   1
zf-MIZ          MIZ zinc finger                           3.2        7.4   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
zf-C3HC4          1/1      41    81 ..     1    50 []    27.8  5.1e-09
zf-MIZ            1/1      77    87 ..    43    53 .]     3.2      7.4
FYVE              1/1      67    91 ..     1    26 [.     4.5      7.8
Peptidase_M16_C   1/1     272   302 ..   166   197 .]     3.5      8.9
Transglutamin_N   1/1     348   368 ..     1    21 [.     6.5        1
chromo            1/1     484   502 ..     1    20 [.     9.6     0.26

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 41 to 81: score 27.8, E = 5.1e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls...gntt
                      C +C++e  + +     ++ C H      fC++C++ Wl +++g++
    C32D5.10    41    CSVCKNEIIDTT----SLSDCCHE-----FCYDCIVGWLTkgsGPF- 77

                   vkCplC<-*
                     Cp+C
    C32D5.10    78 --CPMC    81

zf-MIZ: domain 1 of 1, from 77 to 87: score 3.2, E = 7.4
                   *->rCPvCnknaky<-*
                      +CP C  ++++
    C32D5.10    77    FCPMCKTPVSF    87

FYVE: domain 1 of 1, from 67 to 91: score 4.5, E = 7.8
                   *->phWvpDeevsnCmrCgkpFtkltkRr<-*
                      + W+   +  +C++C++p + +++R+
    C32D5.10    67    VGWLTKGSGPFCPMCKTPVS-FIQRK    91

Peptidase_M16_C: domain 1 of 1, from 272 to 302: score 3.5, E = 8.9
                   *->eeRvlelileeleklaeeGiteeeleraknql<-*
                      ee +++ i++ +e+  + ++++ e+++a n+l
    C32D5.10   272    EE-IINRIFSMIEDRGTRDLNAREVDAALNGL    302

Transglutamin_N: domain 1 of 1, from 348 to 368: score 6.5, E = 1
                   *->seelvvesvdlekdeNrreHH<-*
                      ++++v++s++le +eNr  H+
    C32D5.10   348    DVVTVDDSIELEPEENRSNHR    368

chromo: domain 1 of 1, from 484 to 502: score 9.6, E = 0.26
                   *->eeeyvVEkdDPniIldhrvk<-*
                      ee++vVE+ D  iIld +++
    C32D5.10   484    EEIQVVER-DDTIILDDSNR    502

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