Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C32F10.8
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Query: C32F10.8 CE08545 alanine aminotransferase status:Partially_confirmed TR:O01685 protein_id:AAC24265.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
aminotran_1_2 Aminotransferase class I and II 75.0 8.6e-20 1
Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein 2.2 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
aminotran_1_2 1/1 147 291 .. 1 150 [. 75.0 8.6e-20
Cwf_Cwc_15 1/1 494 505 .. 274 285 .] 2.2 7.9
Alignments of top-scoring domains:
aminotran_1_2: domain 1 of 1, from 147 to 291: score 75.0, E = 8.6e-20
*->klaggtrgpvGlndvrvdleqvlagtGalevaalfisaflapggtkl
+++++ +g + e v++++Ga e++ ++ f ++ ++k
C32F10.8 147 EYIKRRDG-----GIPCNSEDVCLSGGASESIRNVLKLFINHNNAKK 188
devlvpdPtypiysdvlnhaggidGvrlypyplrssnhnDfkaleeaLee
++v +p P yp ys ++ g+ ++ y+l +s ++ +e+ Le+
C32F10.8 189 VGVMIPIPQYPLYSATIEEFGLG---QVG-YYLSESS--NWSMDEAELER 232
apeg.......kvvlvanPhNPtGtdltlaelekiadlakehPnilllvD
++ ++ + +v+ ++nP NPtG +l+++++e+i ++a+++ n++l+ D
C32F10.8 233 SFNDhckeydiRVLCIINPGNPTGQALSRENIETIIKFAQKK-NLFLMAD 281
EAYagfvfGg<-*
E+Y++ v+ +
C32F10.8 282 EVYQDNVYAQ 291
Cwf_Cwc_15: domain 1 of 1, from 494 to 505: score 2.2, E = 7.9
*->eFHKKFldkYik<-*
+FH KFl+ Y
C32F10.8 494 DFHQKFLAEYKR 505