Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C33C12.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C33C12.3 CE29208 glucosylceramidase status:Partially_confirmed TR:O16580 protein_id:AAB66056.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_30 O-Glycosyl hydrolase family 30 1340.0 0 1
Glyco_hydro_59 Glycosyl hydrolase family 59 8.0 0.061 1
MHCK_EF2_kinase MHCK/EF2 kinase domain family 1.7 5.1 1
DUF19 Domain of unknown function DUF19 1.5 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF19 1/1 26 42 .. 1 17 [. 1.5 7.4
Glyco_hydro_59 1/1 181 204 .. 118 141 .. 8.0 0.061
MHCK_EF2_kinase 1/1 385 403 .. 1 22 [. 1.7 5.1
Glyco_hydro_30 1/1 23 519 .. 1 545 [] 1340.0 0
Alignments of top-scoring domains:
DUF19: domain 1 of 1, from 26 to 42: score 1.5, E = 7.4
*->CTevtslkatkClyrlg<-*
CTe+t+++ t C+ +l+
C33C12.3 26 CTEKTFKTGTVCVCSLD 42
Glyco_hydro_59: domain 1 of 1, from 181 to 204: score 8.0, E = 0.061
*->mKEAKKRnPniiLmGLPWsFPGWl<-*
+K A+K nPn+ L PW+ PGWl
C33C12.3 181 IKNAQKYNPNLKLFAAPWAAPGWL 204
MHCK_EF2_kinase: domain 1 of 1, from 385 to 403: score 1.7, E = 5.1
*->ilwrydkGddstskWtqsevlv<-*
il+++++ ++ Wt++ +++
C33C12.3 385 ILDNMNN---WMTGWTERNLIL 403
Glyco_hydro_30: domain 1 of 1, from 23 to 519: score 1340.0, E = 0
*->ArdCieKtFGktgvVCVCnltyCDeiDPpldlalGqaarYttsrsGa
A+dC+eKtF ktg+VCVC+l++CDei Ppld+++Gqaa+Ytts++Ga
C33C12.3 23 AADCTEKTF-KTGTVCVCSLDSCDEI-PPLDITMGQAALYTTSHTGA 67
RlhrdvvyatanepltgLhlTidsskkyQtiqGFGstfsDAsgaNlksLp
Rlhrdv+yat++ep+++Lh+TidsskkyQtiqGFGstfsDAsgaNlksLp
C33C12.3 68 RLHRDVIYATDTEPFGTLHMTIDSSKKYQTIQGFGSTFSDASGANLKSLP 117
dklqdliLkqYFSdeGlnlqfgRVPiAScDFSiRvYtYaDtadDyqlanF
dkl+dli+kqYFSd+GlnlqfgRVPiAS+DFS+RvY+Y+D+a+Dy+++nF
C33C12.3 118 DKLSDLIMKQYFSDTGLNLQFGRVPIASTDFSGRVYSYNDVANDYSMQNF 167
sLpkEDtqwKIPyikrAqkynqrPlkLlAsPWtaPgWLKTtkavkGkGsL
+L+kED+qwKIPyik+Aqkyn++ lkL+A+PW+aPgWLKTtk+++G+G+L
C33C12.3 168 NLTKEDFQWKIPYIKNAQKYNPN-LKLFAAPWAAPGWLKTTKEMTGPGAL 216
kGkagDiYHqtyarYfvkFLeeYaksgiqFWglstqNePtaGsdkkykiQ
+GkagD+YHq+ya+Yfv+FLeeY+ksgi+FWglstqN+Pt+Gsdkk+kiQ
C33C12.3 217 NGKAGDNYHQAYAKYFVRFLEEYGKSGISFWGLSTQNQPTLGSDKKNKIQ 266
slgFTaEhQRDFIkrDlGPaLanStaGknVklLiLDDnRgnLPkWAdtVL
s++FTaE+QRDFIk+DlGPaLa+S++Gk+VklLiLDDnRgnLPkWAdtVL
C33C12.3 267 STLFTAETQRDFIKTDLGPALAASSSGKDVKLLILDDNRGNLPKWADTVL 316
nDkdAAkYVsGIaVHaYqDfLaeadahLgeTHrkhPnvfifgtEAseGsk
nD+dAAkYV+GI+VHaYqD +e+d+hL+eTH+khPn+fi+gtEAseG++
C33C12.3 317 NDMDAAKYVGGIGVHAYQD--GETDNHLDETHKKHPNFFILGTEASEGYG 364
skdqsVdyGswDRaedyssdIldnrenivlkkflenwGkvrkknfkilif
skd++VdyG+wDRa+d++sdIldn
C33C12.3 365 SKDTHVDYGNWDRAADTASDILDN-------------------------- 388
fsnfffhnfffyiffqnlnnwvtGWTerNLvLdaeGGPsWVsnFvDaPvI
+nnw+tGWTerNL+Lda+GGPsWVs+++DaPvI
C33C12.3 389 -----------------MNNWMTGWTERNLILDALGGPSWVSDYTDAPVI 421
afpalaqFYKQPMFYaiaHFShFikpGavRidhslnvknleleavAllnP
afpa+aqFYKQPMFYaiaHFShFikpGavRidhslnv++le+e++A+lnP
C33C12.3 422 AFPAMAQFYKQPMFYAIAHFSHFIKPGAVRIDHSLNVIELEVETTAFLNP 471
DGSkVvVllNkssldvpeysltikDaaksrdHylvtlspkaiitlYiq<-
DGSkV+V+lNk+sl+++e++++++Daa+sr+Hy++tl+++ai+tlYiq
C33C12.3 472 DGSKVIVMLNKGSLVSTEHTVVVQDAADSRNHYHFTLPHRAITTLYIQ 519
*
C33C12.3 - -