Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C33D12.2
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Query: C33D12.2 CE04765 status:Partially_confirmed TR:Q22904 protein_id:AAK39203.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF21 Domain of unknown function DUF21 207.6 6.7e-59 1
CBS CBS domain 15.6 0.016 1
PAAD_DAPIN PAAD/DAPIN/Pyrin domain 4.1 9.5 1
Corona_S2 Coronavirus S2 glycoprotein 1.4 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF21 1/1 142 318 .. 1 198 [] 207.6 6.7e-59
PAAD_DAPIN 1/1 421 441 .. 71 92 .] 4.1 9.5
Corona_S2 1/1 425 469 .. 114 164 .. 1.4 8.6
CBS 1/1 413 474 .. 1 54 [] 15.6 0.016
Alignments of top-scoring domains:
DUF21: domain 1 of 1, from 142 to 318: score 207.6, E = 6.7e-59
*->ilelliiliLillsafFSasEfalvslrkvrleqlaksGnkkaklal
+l+++++liL+++s++FS+++++l++l++++l+++++sG++++k+ +
C33D12.2 142 WLSWICLLILLCFSGLFSGLNLGLMTLSPYELQLYIASGTEQEKRDA 188
klierldrylsavligitlvnilagilgeplldrllgplfknslseslah
i +++++ +++l++++++n+++++++++l+d+l g
C33D12.2 189 GRILPIRKKGNQLLCTLLIGNVVVNVGVSLLMDQLVG------------- 225
dlsfalalgisTfLivvfGEiiPKtiAiqnaervalltappliffyllft
s++ +l+ +T++ivvfGEiiP++++++ ++ ++++t+p+ +++++l++
C33D12.2 226 --SGFAVLVAATSCIVVFGEIIPQALCVKLGLPIGARTIPITQVLLFLMY 273
PlvwllnlianillrlfgvkpkdehdfalteeeLrilvsesa.eaGeldq
Pl+w+++++++i+l+++ ++ l++++L++++++s++++ + ++
C33D12.2 274 PLTWPISKVLDIFLKEELTRS-------LERNKLVEMLKLSEkSIIGGQS 316
dE<-*
dE
C33D12.2 317 DE 318
PAAD_DAPIN: domain 1 of 1, from 421 to 441: score 4.1, E = 9.5
*->rvledipnlrlLAeqLkkekek<-*
rvl d+p lr++ e+ k+++ +
C33D12.2 421 RVLVDMP-LRNMLEEFKRGEYH 441
Corona_S2: domain 1 of 1, from 425 to 469: score 1.4, E = 8.6
*->smelnsmltvskpaglnLAtvssFngdelldPiynlsllltdSvlGG
+m l +ml k++++ A+v++ e dPiy l +l+t
C33D12.2 425 DMPLRNMLEEFKRGEYHMALVERLVEQEDKDPIYELCGLIT------ 465
Lkdl<-*
L+d+
C33D12.2 466 LEDI 469
CBS: domain 1 of 1, from 413 to 474: score 15.6, E = 0.016
*->dimtrdvvtvspdttleealelmrengisrlPVvded........gk
i +++v v d++l+ le +++ +++++V +++++++ +
C33D12.2 413 SIYNHEVRRVLVDMPLRNMLEEFKRGEYHMALVERLVeqedkdpiYE 459
lvGivtlrDllralv<-*
l G++tl+D++++++
C33D12.2 460 LCGLITLEDIIEEII 474