Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C33D9.1b
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Query: C33D9.1b CE30499 locus:exc-5 PH (pleckstrin homology) domain status:Confirmed TR:Q968Z5 protein_id:CAD30432.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 129.6 1e-36 1
PH PH domain 81.0 2e-21 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RhoGEF 1/1 301 479 .. 1 207 [] 129.6 1e-36
PH 1/2 510 613 .. 1 85 [] 62.3 3.7e-16
PH 2/2 720 811 .. 1 85 [] 18.6 0.00076
Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 301 to 479: score 129.6, E = 1e-36
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
++kEl+ +E Yv+ L +l ++++ +L +++ ++t d+i +
C33D9.1b 301 AAKELVDSEQRYVDKLKLLGDTFRNRLIKEE-----LITNDKITRLL 342
sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
+N+ ++y+fh++ +++ L + i+++ + r++ ++ k
C33D9.1b 343 ANVSSLYQFHNTHFLPQLLESIRDW-----------HTTKRIANVVRKQ- 380
epflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
+pfl++Y eY +n+++A +l e l+ + +Fa +++e+e+ + ++
C33D9.1b 381 APFLKMYSEYTNNYDRATKLFEELK---KKKKFADVVKEIEKQAECE--- 424
davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkaldl
l L ++L+ PvqR+ rY+LLL+e++kh ++ ++ d d al+l
C33D9.1b 425 ---GLPLGHHLICPVQRVMRYQLLLQEYKKHLQP--SDVDFDDTTVALEL 469
lqdlaksiNe<-*
+ +a + Ne
C33D9.1b 470 VLQAAAHANE 479
PH: domain 1 of 2, from 510 to 613: score 62.3, E = 3.7e-16
*->vikeGwLlkks...kswkkRyfvLfndvLlyykdsk......kkpkg
+ k+G ++k s+++++ ++R+++Lfnd ++ ++k + +++k++
C33D9.1b 510 LLKSGSVQKISsttEKTEERFIFLFNDLVILASERKmigvskYKLRA 556
sipLsgcqvek.pd...kncFeirt.dr.....tlllqaeseeerkeWvk
+++ s++qv+++++ +++++F++r +d+++++++++l++++++e+++Wv+
C33D9.1b 557 VFSASHMQVCEgDNlerEHSFYLRGsDGtgpkrCVELFTPTQKEKNDWVD 606
aiqsair<-*
+i s+i
C33D9.1b 607 SIFSIID 613
PH: domain 2 of 2, from 720 to 811: score 18.6, E = 0.00076
*->vikeGwLlkks..kswkkRyfvLfn.dvLlyykdsk.kkpkgsipLs
v ++ ++ +++ ++ +R++v++++ +++ y ++ + ++pL
C33D9.1b 720 VLHSSQIRFRGslGKLLDRFMVVRDdFCMYTYSSEEdICALAMLPLP 766
gcqvek.pdkncFeirt.dr.tlllqaeseeerkeWvkaiqsair<-*
gc+v+ +k++F +r + r+ + + ae+e+ +W++ + a++
C33D9.1b 767 GCEVKMcGEKFTFSVRVgARrMYTMTAEDEQTQMKWLAILDLAAN 811