Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C33F10.8
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Query: C33F10.8 CE29695 protein tyrosine phosphatase status:Partially_confirmed TR:Q18385 protein_id:AAL16312.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 230.9 1.8e-65 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Y_phosphatase 1/1 174 407 .. 1 274 [] 230.9 1.8e-65
Alignments of top-scoring domains:
Y_phosphatase: domain 1 of 1, from 174 to 407: score 230.9, E = 1.8e-65
*->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
N KN++kd+++ D+tRVkL +++ YI+An+i++ ++
C33F10.8 174 NTFKNQRKDVPCIDDTRVKLAdpNIVYYIHANHIMF--------DHL 212
pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
+k+yI TQ+Plp T++DFW Mv +qkv++IV Lt+ + + + ++ Y
C33F10.8 213 KKTYITTQHPLPGTLNDFWAMVADQKVETIVSLTSSSSASNP-NV-YPMY 260
WPeeggeeggsltyGditVtlvseekk.ddddytvRtleltn.gdeskne
+P+ + +++ ++G ++V+++ +++ + + ++ +++el + d+
C33F10.8 261 YPN---KPETFNNFGQFFVYCKTVTQPkTKYGCKEYKFELVVqADN---- 303
akqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqene
+e r+V+ yhy+ W+ +vP+s +k +l++++k+ k++sq
C33F10.8 304 -------EERRSVRLYHYPHWTKNMVPAS-SKVVLNLVKKIGKKKSQA-- 343
sgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvid
P+vV+C G+ ++ ++ +d+++ +l++ +v +
C33F10.8 344 ----------------PVVVQCETGVNQSAELVFVDAMCTLLTRQVEV-N 376
ifdivkelRsqRpgmVQteeQYiFiydaile<-*
+ +++Rsq + + + + +++ + ++++
C33F10.8 377 FDVLFRQMRSQKALAMTQLLHFLHSIATVMK 407