Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34D10.1
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Query: C34D10.1 CE02532 status:Partially_confirmed TR:Q18438 protein_id:AAA68422.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 68.7 6.7e-19 1
UPF0040 Domain of unknown function UPF0040 family 6.5 2.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 8 122 .. 1 138 [] 68.7 6.7e-19
UPF0040 1/1 117 143 .. 48 75 .] 6.5 2.4
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 8 to 122: score 68.7, E = 6.7e-19
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+l+++ ++t +f +n + + +++ +tl+Np+ + i++K+ +T++
C34D10.1 8 ALPVFVNTTELQFRLNEK-S---QAKLFTLYNPFGHVITYKILCTAT 50
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
++Y+V+ ++G+l+++++++i+v+ ++ lp n dK++++
C34D10.1 51 RNYTVNETTGVLQAKCCQDIVVR--------CIQRLPV---GNVDKLKIE 89
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
+++ +s++a+ ++ ++ ++++ + fe
C34D10.1 90 ISKKGSPTAS------GSCVLTLLTVSS--EHTNPDEPRFE 122
UPF0040: domain 1 of 1, from 117 to 143: score 6.5, E = 2.4
*->draeWeqyleelaeesfsakaerallrl<-*
d+ ++e+ ++ +++s+s+ +er +r+
C34D10.1 117 DEPRFEKVQQS-NRMSSSTTSERGNDRN 143