Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34D4.14
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Query: C34D4.14 CE17508 status:Partially_confirmed TR:Q18447 protein_id:AAB00699.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HECT HECT-domain (ubiquitin-transferase) 152.0 1e-41 2
ank Ankyrin repeat 31.0 5.1e-07 3
PUA PUA domain 8.1 1.4 1
LEA Late embryogenesis abundant protein 6.0 3.7 1
PWI PWI domain 5.0 3 1
Caleosin Caleosin related protein 3.8 4.2 1
Nramp Natural resistance-associated macrophage pro 2.7 7.9 1
HTS Homoserine O-succinyltransferase 2.7 6.6 1
DUF634 Protein of unknown function (DUF634) 2.4 4.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF634 1/1 183 207 .. 240 264 .] 2.4 4.9
ank 1/3 381 402 .. 8 29 .. 9.3 0.73
ank 2/3 405 475 .. 1 33 [] 21.7 0.00022
ank 3/3 476 499 .. 1 21 [. 0.0 3.3e+02
Nramp 1/1 596 604 .. 1 9 [. 2.7 7.9
PWI 1/1 616 659 .. 39 84 .] 5.0 3
HTS 1/1 791 797 .. 298 304 .] 2.7 6.6
PUA 1/1 1217 1235 .. 63 80 .] 8.1 1.4
Caleosin 1/1 1222 1244 .. 1 25 [. 3.8 4.2
LEA 1/1 1922 1942 .. 55 75 .] 6.0 3.7
HECT 1/2 2425 2482 .. 27 88 .. 14.4 0.0053
HECT 2/2 2574 2761 .] 159 358 .] 137.3 2.8e-37
Alignments of top-scoring domains:
DUF634: domain 1 of 1, from 183 to 207: score 2.4, E = 4.9
*->esevCakKlralasHhDleVKvKVi<-*
e ++Ca l al +H D+ V + ++
C34D4.14 183 ELGKCAESLGALLEHEDPKVSESAL 207
ank: domain 1 of 3, from 381 to 402: score 9.3, E = 0.73
*->lAakrgnlevvklLlqrGAdln<-*
+A+ g++e+v++L ++G+d+n
C34D4.14 381 WASAFGSIEMVQYLCDKGSDVN 402
ank: domain 2 of 3, from 405 to 475: score 21.7, E = 0.00022
*->dGnTPLHlAakrg..................................
+ ++ LH+Aa+ g ++ + + + + ++ + + +
C34D4.14 405 HKSSSLHYAACFGrpdvscdanvfrviralahfyyntyllhrdlfsr 451
....nlevvklLlqrGAdlnaqdd<-*
+++ +vvklLlqrGA+++++d
C34D4.14 452 sehcLSQVVKLLLQRGANPDLRDE 475
ank: domain 3 of 3, from 476 to 499: score 0.0, E = 3.3e+02
*->dGnTPLHlAakrg...nlevvklL<-*
dG T+L A +r ++++++v+ L
C34D4.14 476 DGKTALDKARERSdddHNQVANIL 499
Nramp: domain 1 of 1, from 596 to 604: score 2.7, E = 7.9
*->yetdlqAGA<-*
++td++AGA
C34D4.14 596 MSTDVSAGA 604
PWI: domain 1 of 1, from 616 to 659: score 5.0, E = 3
*->DGEekknlnskmLkiNltgfildeeAeeFVgkLWeLLIeeeksreg<
D E+++ + L i + ++l ++Ae V++L +L ++e+ +
C34D4.14 616 DQEDDHEGHEQVLLI--LESLLEKDAELWVIELVRLGVFERVEAMA 659
-*
C34D4.14 - -
HTS: domain 1 of 1, from 791 to 797: score 2.7, E = 6.6
*->QeTPYdL<-*
Q+TPY++
C34D4.14 791 QGTPYRW 797
PUA: domain 1 of 1, from 1217 to 1235: score 8.1, E = 1.4
*->eEmkei.kkGkavkvrrvl<-*
+E++e ++kGk++++r+v
C34D4.14 1217 KEIQELkTKGKSIELRHVS 1235
Caleosin: domain 1 of 1, from 1222 to 1244: score 3.8, E = 4.2
*->hdeeemtvLQkHVaFFDrnkdGiiY<-*
++ ++++ +HV+ FD n G+iY
C34D4.14 1222 LKTKGKSIELRHVSDFDEN--GVIY 1244
LEA: domain 1 of 1, from 1922 to 1942: score 6.0, E = 3.7
*->tgnkakekaeeaKdkasdakd<-*
tg++++++ ++aKd++++ ++
C34D4.14 1922 TGESLSDASSSAKDATTNEAQ 1942
[output cut off at A = 10 top alignments]