Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34G6.2
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Query: C34G6.2 CE08574 status:Partially_confirmed TR:O01497 protein_id:AAB52481.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 151.2 6.6e-44 4
tyrosinase Common central domain of tyrosinase 62.5 1.5e-16 2
hemocyanin Hemocyanin, copper containing domain 5.3 2.3 1
TIL Trypsin Inhibitor like cysteine rich domai 4.6 4.1 1
NAGLU Alpha-N-acetylglucosaminidase (NAGLU) 2.8 3.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NAGLU 1/1 155 164 .. 133 142 .. 2.8 3.1
tyrosinase 1/2 153 187 .. 102 138 .. 26.5 1.6e-06
hemocyanin 1/1 293 318 .. 271 296 .] 5.3 2.3
tyrosinase 2/2 282 381 .. 269 379 .] 39.8 3.1e-10
ShTK 1/4 457 493 .. 1 44 [] 41.8 4.7e-11
ShTK 2/4 501 537 .. 1 44 [] 49.1 3.2e-13
TIL 1/1 584 601 .. 1 20 [. 4.6 4.1
ShTK 3/4 567 603 .. 1 44 [] 39.0 3.5e-10
ShTK 4/4 611 646 .. 1 44 [] 45.2 4.6e-12
Alignments of top-scoring domains:
NAGLU: domain 1 of 1, from 155 to 164: score 2.8, E = 3.1
*->gGPAFlAWaR<-*
+GPAFl+W+R
C34G6.2 155 SGPAFLPWHR 164
tyrosinase: domain 1 of 2, from 153 to 187: score 26.5, E = 1.6e-06
*->vHesplFlpWHRwYLyfyEriLgklindptFAlPYWn<-*
+H++p+FlpWHR ++ ++E +L+ + pt+ lPYW+
C34G6.2 153 AHSGPAFLPWHREFVKRVEFALRQVD--PTVNLPYWD 187
hemocyanin: domain 1 of 1, from 293 to 318: score 5.3, E = 2.3
*->lddysTsLRDPvFYrlhkrIdnifqe<-*
+ d+ Ts DP+F+ h +Id + e
C34G6.2 293 MFDTATSSNDPSFFLHHAFIDFVWEE 318
tyrosinase: domain 2 of 2, from 282 to 381: score 39.8, E = 3.1e-10
*->HNpvHiwtGgntkynlPngisngedMgsfysaafDPIFylHHsNVDR
H vHi++Gg dM + ++++DP F+lHH++ D
C34G6.2 282 HGNVHIFVGG--------------DMFDTATSSNDPSFFLHHAFIDF 314
lWsiWkalggksFrt.....dfpeadwlis.hfrfydenpfppkrvkvrD
+W++W + + ++++ ++++ ++ ++hf +++pf p ++ D
C34G6.2 315 VWEEWRLARQSR-ADreiafPPDNQLCASAqHFGASPMQPFSP--MRNID 361
cfdtsrpklGYdYedqptpw<-*
+ + + Y+Y++ pt
C34G6.2 362 GLSNKYTDNLYSYAPRPTCQ 381
ShTK: domain 1 of 4, from 457 to 493: score 41.8, E = 4.7e-11
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ +++ +Ca+wa+ Ge C++++ ++m+e C+ +CG C+
C34G6.2 457 SCF---NENQCCASWAASGE-CSRNT---AYMNEWCKASCGVCK 493
ShTK: domain 2 of 4, from 501 to 537: score 49.1, E = 3.2e-13
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ D+++ C++w + Ge C++++ +m+enC+k+C+ C+
C34G6.2 501 DCT---DRHTQCSSWSRSGE-CTKNQ---LWMTENCRKSCNKCG 537
TIL: domain 1 of 1, from 584 to 601: score 4.6, E = 4.1
*->CpaneqyteCgpsCepsCsn<-*
C +n y +C C +sC++
C34G6.2 584 CRKNTRYMACN--CRVSCGH 601
ShTK: domain 3 of 4, from 567 to 603: score 39.0, E = 3.5e-10
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ +++++Ca w +Ge C++++ ++m+ nC+ +CG C+
C34G6.2 567 GCF---NENVCCAVWGLMGE-CRKNT---RYMACNCRVSCGHCY 603
ShTK: domain 4 of 4, from 611 to 646: score 45.2, E = 4.6e-12
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+Cv D++ +Ca wa+ Ge C+++ ++m+enC+ +C+ C+
C34G6.2 611 SCV---DYHRSCAGWARVGE-CQKN----PWMAENCRSSCNSCY 646