Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34H4.1
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Query: C34H4.1 CE25804 status:Partially_confirmed TR:O45144 protein_id:AAC04390.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF274 Protein of unknown function (DUF274) 564.7 6.1e-166 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF274 1/1 40 395 .. 1 410 [] 564.7 6.1e-166
Alignments of top-scoring domains:
DUF274: domain 1 of 1, from 40 to 395: score 564.7, E = 6.1e-166
*->veapyniYVSAssDDnslLqqIkvttgdgyqsktLdqLnqnrilqnd
v++++++Y+ AssDD+++L+qI++t++++ +ktLdqL++n ++++
C34H4.1 40 VDNLSKLYL-ASSDDAQVLSQITITSNGQ--TKTLDQLQAN--VDAN 81
GeiqpfpvsksayItTtLsdnttkkLtGvIYvTTskQanDptFsVYvVkd
G++++fpv+++++I+T++s++tt++L+G+++v+++++a+Dp+F+VYvV+d
C34H4.1 82 GFQNGFPVNSDLTISTANSQDTTVNLSGILFVSSPDMAKDPNFLVYVVAD 131
aqtisitgmknvnsTiVfLNTnlrtlepsdyDqPrksSyvsnwnQtsnss
++++++++++ +++T+V+LN+++++ ++ P+++++v+++nQ+s+++
C34H4.1 132 QVRTVDRSTN-DETTLVLLNVRNTS-RA-----PYYNTRVESINQPSSTN 174
lylYaGiPaDswtqPKFqektnnqiFsNPihtdngdtnkelknftrlFFd
l++Y+G+P+D++t+PKFqe+++++iF+NP++t++++t+++ +FFd
C34H4.1 175 LLVYHGVPEDGYTDPKFQETSRQLIFQNPVITYFTGTISS------MFFD 218
nVEpfqlsLgaFYiktsggvnFkIvpnkyvidgnYtTTsvtTTGfyMkpl
++Ep+q++L++++i+++gg++Fk v++++v++++Y+TT++tTTG++M+++
C34H4.1 219 HIEPIQYTLRTWHIRAIGGISFK-VSQQWVDMSTYQTTAATTTGYTMSQS 267
vyndsTvtVNikrDtrrsGtsGanvvgylptgdgnVtvgfydgsfkyeqt
v+n+sTv+++++++++++G++G++++++++++d+nVt+++++++++++++
C34H4.1 268 VSNNSTVNFKYTENAGDGGMFGFMINTADKQTDMNVTSCYNTDCITEKFV 317
vtpntynsqpwsiPkigaqtLtvsSTSSnslaGefYvQYFvfqGdllpit
+t+++y++ ++++Pk+ ++tL++++T n+++G+fY+QY++++++++
C34H4.1 318 QTMPVYTD-IFQYPKN-YTTLYMDHT--NTNEGIFYLQYCRSEAAVG--- 360
ssvtTstPpqtttTTttSkaPqatgSvsaspttTsrieTTTKssgnvkLq
v+++tP++ +eTTTK+s++++L+
C34H4.1 361 --VSSTTPAS--------------------------METTTKTSATISLH 382
lfvslvtlsmlwl<-*
++++++++sm+++
C34H4.1 383 ILLIISLISMISI 395