Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C34H4.1
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Query:  C34H4.1  CE25804    status:Partially_confirmed TR:O45144 protein_id:AAC04390.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF274   Protein of unknown function (DUF274)           564.7   6.1e-166   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF274     1/1      40   395 ..     1   410 []   564.7 6.1e-166

Alignments of top-scoring domains:
DUF274: domain 1 of 1, from 40 to 395: score 564.7, E = 6.1e-166
                   *->veapyniYVSAssDDnslLqqIkvttgdgyqsktLdqLnqnrilqnd
                      v++++++Y+ AssDD+++L+qI++t++++  +ktLdqL++n  ++++
     C34H4.1    40    VDNLSKLYL-ASSDDAQVLSQITITSNGQ--TKTLDQLQAN--VDAN 81

                   GeiqpfpvsksayItTtLsdnttkkLtGvIYvTTskQanDptFsVYvVkd
                   G++++fpv+++++I+T++s++tt++L+G+++v+++++a+Dp+F+VYvV+d
     C34H4.1    82 GFQNGFPVNSDLTISTANSQDTTVNLSGILFVSSPDMAKDPNFLVYVVAD 131

                   aqtisitgmknvnsTiVfLNTnlrtlepsdyDqPrksSyvsnwnQtsnss
                   ++++++++++ +++T+V+LN+++++ ++     P+++++v+++nQ+s+++
     C34H4.1   132 QVRTVDRSTN-DETTLVLLNVRNTS-RA-----PYYNTRVESINQPSSTN 174

                   lylYaGiPaDswtqPKFqektnnqiFsNPihtdngdtnkelknftrlFFd
                   l++Y+G+P+D++t+PKFqe+++++iF+NP++t++++t+++      +FFd
     C34H4.1   175 LLVYHGVPEDGYTDPKFQETSRQLIFQNPVITYFTGTISS------MFFD 218

                   nVEpfqlsLgaFYiktsggvnFkIvpnkyvidgnYtTTsvtTTGfyMkpl
                   ++Ep+q++L++++i+++gg++Fk v++++v++++Y+TT++tTTG++M+++
     C34H4.1   219 HIEPIQYTLRTWHIRAIGGISFK-VSQQWVDMSTYQTTAATTTGYTMSQS 267

                   vyndsTvtVNikrDtrrsGtsGanvvgylptgdgnVtvgfydgsfkyeqt
                   v+n+sTv+++++++++++G++G++++++++++d+nVt+++++++++++++
     C34H4.1   268 VSNNSTVNFKYTENAGDGGMFGFMINTADKQTDMNVTSCYNTDCITEKFV 317

                   vtpntynsqpwsiPkigaqtLtvsSTSSnslaGefYvQYFvfqGdllpit
                   +t+++y++ ++++Pk+ ++tL++++T  n+++G+fY+QY++++++++
     C34H4.1   318 QTMPVYTD-IFQYPKN-YTTLYMDHT--NTNEGIFYLQYCRSEAAVG--- 360

                   ssvtTstPpqtttTTttSkaPqatgSvsaspttTsrieTTTKssgnvkLq
                     v+++tP++                          +eTTTK+s++++L+
     C34H4.1   361 --VSSTTPAS--------------------------METTTKTSATISLH 382

                   lfvslvtlsmlwl<-*
                   ++++++++sm+++
     C34H4.1   383 ILLIISLISMISI    395



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