Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C35D10.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C35D10.4 CE01198 status:Partially_confirmed SW:Q18486 protein_id:AAA62560.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC1 ABC1 family 203.8 5.9e-60 1
SNF5 SNF5 / SMARCB1 / INI1 2.4 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SNF5 1/1 480 490 .. 312 322 .] 2.4 10
ABC1 1/1 395 511 .. 1 124 [] 203.8 5.9e-60
Alignments of top-scoring domains:
SNF5: domain 1 of 1, from 480 to 490: score 2.4, E = 10
*->kkerdkdRntR<-*
k+e d++R++R
C35D10.4 480 KQECDYEREAR 490
ABC1: domain 1 of 1, from 395 to 511: score 203.8, E = 5.9e-60
*->eeLGapieeiFaeFdeePiAaASIAQVHrAvLkdsyGeeVAVKVQrP
++G+ ++e+F++Fd++P+A+ASI+QVH+AvLkd G+ VAVKVQ+P
C35D10.4 395 DAFGDDWREKFEHFDDKPFACASIGQVHKAVLKD--GRNVAVKVQYP 439
gvkkrirrDlkllkflakilkkfppggrRlrldldwivdEfrksLpqELD
gv++ i++D+++l ++ + fp+g ++ld+ v ++r++L+qE+D
C35D10.4 440 GVAEGIDSDIDNLVSVLSVGGIFPKG-----MFLDAFVGVARRELKQECD 484
flrEAanaerfrenfaddpwvyVPkVy<-*
++rEA+++++fre++ad+++vyVP+V+
C35D10.4 485 YEREARAMKKFRELIADWQDVYVPEVI 511