Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C35E7.9
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Query: C35E7.9 CE17522 status:Partially_confirmed TR:O61765 protein_id:AAC17524.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 118.0 2.6e-33 1
Bmp Basic membrane protein 4.5 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Bmp 1/1 10 46 .. 1 32 [. 4.5 1.8
MSP_domain 1/1 192 301 .] 1 138 [] 118.0 2.6e-33
Alignments of top-scoring domains:
Bmp: domain 1 of 1, from 10 to 46: score 4.5, E = 1.8
*->lifllalllagCfssgkkeqTtqttt......akskiv<-*
+i++++ lagC++++kk+ ++ t++ ++a+sk +
C35E7.9 10 GITIAGWILAGCGGKKKKD-GKSSTAsaaapkADSKMK 46
MSP_domain: domain 1 of 1, from 192 to 301: score 118.0, E = 2.6e-33
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+++++Pp+ + +f++ + +++l+ltN++dk+i+FK+Kt++n
C35E7.9 192 HITIDPPGDL-MFKA--DQQ---EQKKLKLTNTHDKKIMFKIKTSDN 232
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
++Y ++PvyG +ePg+s+n++ t r+k + k + K+v+
C35E7.9 233 QVYLMNPVYGTVEPGKSANLTLT--------RNKAPAK-----EAKLVIV 269
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
++++++d+d ++ fk+ +++g g+++i++ +
C35E7.9 270 NSVFSGDDKD------LAKSFKTGKPTG---GQVTIMLNGK 301