Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C35E7.10a
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Query:  C35E7.10a  CE17523   protein kinase status:Partially_confirmed TR:O61767 protein_id:AAC17525.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                          203.0    4.6e-57   1
SH2      SH2 domain                                      49.8    5.2e-16   1
catalase Catalase                                         3.9        2.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH2        1/1      11    87 ..     1    79 []    49.8  5.2e-16
catalase   1/1     340   362 ..   261   283 ..     3.9      2.9
pkinase    1/1     121   376 ..     1   294 []   203.0  4.6e-57

Alignments of top-scoring domains:
SH2: domain 1 of 1, from 11 to 87: score 49.8, E = 5.2e-16
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGd...YtLSVrdd
                      +yhG ++R++ +++L++    +G FL+R Se  +G++++++LSV+ +
   C35E7.10a    11    YYHGLLPREDIQEMLNK----PGQFLLRTSEPVKGEkrqFVLSVVGE 53

                   gp.rVkHyrIqsldnggyyitggvkFssLpeLvehY<-*
                    +++  H+++++ d + +y+     F+++ eLv+hY
   C35E7.10a    54 KKtSANHFVVRESDHK-VYVDK-IGFPTIIELVNHY    87

catalase: domain 1 of 1, from 340 to 362: score 3.9, E = 2.9
                   *->MteedakkydFnpfDlTKvWPee<-*
                      M+++ + + +F +f+lTK WPe+
   C35E7.10a   340    MPFSPEVNKEFAEFILTKCWPEK    362

pkinase: domain 1 of 1, from 121 to 376: score 203.0, E = 4.6e-57
                   *->yelleklGeGsfGkVykakhkd.....ktgkiVAvKilkk...ekes
                       el +klGeG+fG+V+k+k+++  + +    +VAvK+ k+++ +ke+
   C35E7.10a   121    VELTKKLGEGAFGEVWKGKLLKildanHQPVLVAVKTAKLesmTKEQ 167

                   ikekrflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdy
                   ike  + rE++++++L+H N+v+++gv     ++ly++mE+++gG L +
   C35E7.10a   168 IKE--IMREARLMRNLDHINVVKFFGVAA-GTEPLYVIMELADGGALDSA 214

                   lrrnggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgt
                   l +    +++     +++Q ++Gl+Y+H+++ +HRD++++N+L      +
   C35E7.10a   215 LGKLH--FPMIKKYELIYQAANGLAYIHEKNLMHRDVAARNCLYGGG--Q 260

                   vKiaDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSlG
                   vKiaDFGL+r+   +++++     p ++++PE  +++  y++k Dv ++G
   C35E7.10a   261 VKIADFGLSREGA-DYTMDLKKKVPIRWLPPET-IRSGLYTPKTDVFAFG 308

                   viLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridp
                   v+ +E+   g                         k+P+++        +
   C35E7.10a   309 VMAWEITEDG-------------------------KEPYPG-------FK 326

                   leelfriikrpglrlplpsncSee.lkdLlkkcLnkDPskRpGsatakei
                     e+   +++ g+r+p+ +++ +e +  +l+kc+    ++R+    +k+i
   C35E7.10a   327 VIEVAMKVLQ-GYRMPFSPEVNKEfAEFILTKCWPEKYEDRL---PMKDI 372

                   lnhpwf<-*
                      +w+
   C35E7.10a   373 --CKWM    376



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