Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C36A4.4
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Query: C36A4.4 CE27831 status:Partially_confirmed SW:Q18493 protein_id:CAA91270.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UDPGP UTP--glucose-1-phosphate uridylyltran 183.7 1.6e-51 2
NTP_transferase Nucleotidyl transferase 9.0 0.14 1
Peptidase_S51 Peptidase family S51 7.7 0.47 1
IspD Uncharacterized protein family UPF000 5.2 2.3 1
PigN Phosphatidylinositolglycan class N (P 1.4 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NTP_transferase 1/1 103 115 .. 1 13 [. 9.0 0.14
Peptidase_S51 1/1 97 116 .. 212 234 .] 7.7 0.47
IspD 1/1 102 121 .. 1 20 [. 5.2 2.3
UDPGP 1/2 77 185 .. 36 162 .. 47.9 7.5e-13
PigN 1/1 244 252 .. 1 9 [. 1.4 8
UDPGP 2/2 223 409 .. 216 410 .. 135.8 6.8e-38
Alignments of top-scoring domains:
NTP_transferase: domain 1 of 1, from 103 to 115: score 9.0, E = 0.14
*->kaiILAGGsGTRL<-*
+ai+LAGG TRL
C36A4.4 103 CAIVLAGGQATRL 115
Peptidase_S51: domain 1 of 1, from 97 to 116: score 7.7, E = 0.47
*->lGLreGsaldvedgsyTkarLlG<-*
+G +e++a+ +g +a++lG
C36A4.4 97 IGRGEVCAIVLAGG---QATRLG 116
IspD: domain 1 of 1, from 102 to 121: score 5.2, E = 2.3
*->vvaviPAAGsGkRmgaGlPK<-*
v+a++ A G+ +R+g+ PK
C36A4.4 102 VCAIVLAGGQATRLGSSQPK 121
UDPGP: domain 1 of 2, from 77 to 185: score 47.9, E = 7.5e-13
*->vvevllSeeYddldlpaledeglaalllsKLaVlKLnGGlGtrlGck
v+ +e ++ l +l++ g a+ ++ + ++L+GG+ trlG++
C36A4.4 77 VQ-----AELHQVILDGLWNKGMDAIGRGEVCAIVLAGGQATRLGSS 118
gPKglieVrLpKDsvngktFLDLivrqIeklQrlAekAmSqlNkrYgnsd
PKg+i+ +++ ++g ++L +++++I+ lQ lA + + +
C36A4.4 119 QPKGTIPLGIN--ASFGDSLLGIQAAKIALLQALAGE------REH-QNP 159
CGKmIVPLilQMtSfnTheeTskflekLFA<-*
GK + ++ MtS+ T+e T + ++kL A
C36A4.4 160 -GK--IHWAV-MTSPGTEEATREHVKKLAA 185
PigN: domain 1 of 1, from 244 to 252: score 1.4, E = 8
*->EGldYYhtY<-*
+G++Y+h Y
C36A4.4 244 KGIKYFHVY 252
UDPGP: domain 2 of 2, from 223 to 409: score 135.8, E = 6.8e-38
*->yPpGhGdlftsLksSGllDkLlaqGKeyiFVsNVDNvLGatvDlkiL
+P G+G+l+ ++ + l +L a G++y +V++VDN+L +++D+ ++
C36A4.4 223 APNGNGGLYSAISAH--LPRLRAKGIKYFHVYCVDNILCKVADPHFI 267
nhiidkkieygmEvTdKtkAdekgGvLiVsyadGkLrlVEysqGvpkehv
++ i ++++++ + ++K+k e +G ++ + G r+VEys+ + +e +
C36A4.4 268 GFAISNEADVATKCVPKQKG-ELVGSVCLDR--GLPRVVEYSE-LGAELA 313
qeFksiskfllfNtNNiwlnLkavkrLievanseeldleiivneKkipys
+ k+ + lf ++ i+++++++++ v s++ l+++ + Kki y+
C36A4.4 314 EQ-KTPDGKYLFGAGSIANHFFTMDFMDRVC-SPSSRLPYHRAHKKISYV 361
nteiQLIKPDKgnviqlEtaigdaiqyfenslgieVpRsReFlPvKnt<-
n+++ ++KP+K+n+i+lE++i+d++ +++ + + eV R++eF+P+Kn+
C36A4.4 362 NEQGTIVKPEKPNGIKLEQFIFDVFELSKRFFIWEVARNEEFSPLKNA 409
*
C36A4.4 - -