Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C36E8.5
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Query: C36E8.5 CE00913 locus:tbb-2 beta tubulin status:Confirmed SW:P52275 protein_id:CAA84648.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tubulin Tubulin/FtsZ family, GTPase domain 379.2 7e-111 1
tubulin_C Tubulin/FtsZ family, C-terminal domai 269.0 6.1e-77 1
acid_phosphat_B Acid phosphatase (Class B) 5.6 1.7 1
Enterotoxin_B Heat-labile enterotoxin beta chain 4.9 2.5 1
Cucumo_2B Cucumovirus protein 2B 3.4 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cucumo_2B 1/1 97 106 .. 98 107 .] 3.4 9.1
acid_phosphat_B 1/1 213 225 .. 247 259 .] 5.6 1.7
tubulin 1/1 45 244 .. 1 224 [] 379.2 7e-111
tubulin_C 1/1 246 383 .. 1 151 [] 269.0 6.1e-77
Enterotoxin_B 1/1 411 444 .. 1 34 [. 4.9 2.5
Alignments of top-scoring domains:
Cucumo_2B: domain 1 of 1, from 97 to 106: score 3.4, E = 9.1
*->AGNEWaEGSF<-*
AGN Wa G +
C36E8.5 97 AGNNWAKGHY 106
acid_phosphat_B: domain 1 of 1, from 213 to 225: score 5.6, E = 1.7
*->RtfkLPNPmYyiw<-*
Rt+kL NP+Y+++
C36E8.5 213 RTLKLTNPTYGDL 225
tubulin: domain 1 of 1, from 45 to 244: score 379.2, E = 7e-111
*->arIkVfgvgggggkhYvpRAVnrdlEpgveQegleGVefiainTdaq
+rI+V+++++ + ++YvpRAV++dlEpg +++ +++++++
C36E8.5 45 ERIDVYYNEANN-GKYVPRAVLVDLEPG--------TMD-SVRSGPF 81
alksksLfapeniqiGkelgGtgnngAgGhpeiGeeaaeesldeIrkele
++ Lf+p+n+++G++ G+gnn+A+Gh+++G+e+++ +ld+Irke+e
C36E8.5 82 GQ----LFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDNVLDVIRKEAE 125
gcdsLdgffithsmGGGTGsGagpvlaeiakeegpptKkilaltvgVvps
gcd+L+gf++ths+GGGTGsG+g++l+++++ee+p ++i+ ++ Vvps
C36E8.5 126 GCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP--DRIMSSFS-VVPS 172
PfvessEgvvrpyNAelglheLlehsDtlividNeaLldicdknlkikda
P+v s++vv+pyNA+l++h+L+e+ D++ +idNeaL+dic ++lk++++
C36E8.5 173 PKV--SDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNP 220
frvasdlmNdllaqvvsgITdslrfPG<-*
+ ++dl N+l++ ++sg+T++lrfPG
C36E8.5 221 T--YGDL-NHLVSLTMSGVTTCLRFPG 244
tubulin_C: domain 1 of 1, from 246 to 383: score 269.0, E = 6.1e-77
*->lNvDladvrtnLvPfPRlHFammGyaPlsg.....hralsVleltrq
lN+Dl+++++n+vPfPRlHF+m G+aPls+++++ +ral+V+elt+q
C36E8.5 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLSAkgtqaYRALTVAELTQQ 292
afdspnlmvavdprhkkGaygalanitgrgdvtlkEvneaierireknsd
+fd +n+m+a+dprh G+y+++a+ ++rg+++++Ev+e++ ++++kns
C36E8.5 293 MFDAKNMMAACDPRH--GRYLTVAA-MFRGRMSMREVDEQMLNVQNKNS- 338
aqFVeWapiifktaiddeppygvrvsvdLAkvvsgvmtGNtTaksasgeI
++FVeW+p+++kta++d+pp+g+++ ++++GN+Ta I
C36E8.5 339 SYFVEWIPNNVKTAVCDIPPRGLKMA--------ATFVGNSTA------I 374
qelfkrile<-*
qelfkri+e
C36E8.5 375 QELFKRISE 383
Enterotoxin_B: domain 1 of 1, from 411 to 444: score 4.9, E = 2.5
*->aPqniteLCaEYhntqiytlnDKilsYtEslAGk<-*
a n+ +L +EY+ q t D + Y E AG+
C36E8.5 411 AESNMNDLISEYQQYQEATAEDDVDGYAEGEAGE 444