hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C37A2.7
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Query:  C37A2.7  CE30433   ribosomal protein status:Confirmed TR:O01504 protein_id:AAB52450.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
60s_ribosomal 60s Acidic ribosomal protein              116.9    2.4e-33   1
STAS          STAS domain                                 4.7        4.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
STAS            1/1      22    45 ..    90   116 .]     4.7      4.3
60s_ribosomal   1/1      17   106 ..     1    94 []   116.9  2.4e-33

Alignments of top-scoring domains:
STAS: domain 1 of 1, from 22 to 45: score 4.7, E = 4.3
                   *->evrrtleltGlddligkekifptvaeA<-*
                      +v+++le++Gld ++   +  ++v +A
     C37A2.7    22    DVLKVLEAGGLDCDM---ENANSVVDA    45

60s_ribosomal: domain 1 of 1, from 17 to 106: score 116.9, E = 2.4e-33
                   *->eitaadikailkaAgvnvdavrvkllaaalegkdikeliangsakgv
                      +++a+d++++l+a+g + d+  ++++++al+gk+i e+ia g+ k++
     C37A2.7    17    SPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLS 63

                   avpaaaAaAaaaaAaaAAagAaaaaEEkKeEeeEeEEsDDDMGFGLF<-*
                   +vp+++   a+aaAa+ ++ Aa++aEEkK+Ee++ EEsDDDMGFGLF
     C37A2.7    64 SVPSGGS--APAAAAPSGG-AAPKAEEKKKEEPK-EESDDDMGFGLF    106

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