Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C37H5.9a
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Query: C37H5.9a CE08632 status:Partially_confirmed TR:P91137 protein_id:AAB42372.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Astacin Astacin (Peptidase family M12A) 140.5 9e-43 2
ShTK ShTK domain 19.6 0.00022 1
DUF83 Domain of unknown function DUF83 6.1 3.7 1
tRNA-synt_1d tRNA synthetases class I (R) 4.3 2 1
B56 Protein phosphatase 2A regulatory B subu 1.7 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
B56 1/1 121 130 .. 1 10 [. 1.7 9.1
tRNA-synt_1d 1/1 201 233 .. 1 33 [. 4.3 2
DUF83 1/1 326 342 .. 41 57 .. 6.1 3.7
Astacin 1/2 314 392 .. 1 85 [. 37.1 1.3e-10
Astacin 2/2 394 479 .. 115 200 .] 103.3 3.4e-31
ShTK 1/1 480 517 .] 1 43 [. 19.6 0.00022
Alignments of top-scoring domains:
B56: domain 1 of 1, from 121 to 130: score 1.7, E = 9.1
*->pLPlfkDvpv<-*
+LP+f+Dvp+
C37H5.9a 121 QLPQFTDVPT 130
tRNA-synt_1d: domain 1 of 1, from 201 to 233: score 4.3, E = 2
*->kaflaeivtkiLaqgekyGqsatlenkkVvvEF<-*
+++ e +tk La ++ G++a++++ kV++ F
C37H5.9a 201 TQAKQELLTKMLAFDQAVGGKAAPAHDKVNLRF 233
DUF83: domain 1 of 1, from 326 to 342: score 6.1, E = 3.7
*->ELkeedkeeikeaIeeI<-*
+L+e dk+ i++a++eI
C37H5.9a 326 SLEESDKKDIRDALHEI 342
Astacin: domain 1 of 2, from 314 to 392: score 37.1, E = 1.3e-10
*->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
+W+ +I Y++++s++ ++ +ir A ++++ +TCi F +
C37H5.9a 314 DIWK------PIQYTLDDSLEESDKKDIRDALHEISINTCILFRYNA 354
sa..gendylrffsgdGCw.SyVGrrggGaeQevSlganGC<-*
+++ + +y+++ s ++C+ SyVGr+ ++a ++++l+ C
C37H5.9a 355 TPkgYHLNYMKVDSTTFCGlSYVGRT-DPA-NPIYLS-FQC 392
Astacin: domain 2 of 2, from 394 to 479: score 103.3, E = 3.4e-31
*->sInwqNIdpgqeynFdKydpdqvdslGvPYDYgSiMHYgpyaFSkng
+I+w+NIdp+ ++ F++ d++ ++s+G++Y Y+SiMHY++y +k++
C37H5.9a 394 DIDWSNIDPQHYDTFAISDAKLYTSYGTKYAYDSIMHYNAYLGAKDP 440
skpTIvpkdnk.vyqatiGQReglSflDikkiNklYnCpe<-*
+kpT++p++n++ + + +GQR++l ++Di+++ k+Y C
C37H5.9a 441 NKPTMIPLVNPqENTPKLGQRAKLTRGDIRLLKKMY-CRP 479
ShTK: domain 1 of 1, from 480 to 517: score 19.6, E = 0.00022
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
+C D +++C +wa G+ C+ + +m+enC+ +C C
C37H5.9a 480 GCD---DQNVHCGTWALHGY-CKMKE-QMKWMNENCKASCDKC 517