hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C39E6.4
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Query:  C39E6.4  CE30891    status:Partially_confirmed TR:Q18533 protein_id:AAM51525.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
homeobox Homeobox domain                                101.5    1.6e-26   1
SHQ1     SHQ1 protein                                     7.9      0.076   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SHQ1       1/1     223   242 ..     1    23 [.     7.9    0.076
homeobox   1/1     202   258 ..     1    57 []   101.5  1.6e-26

Alignments of top-scoring domains:
SHQ1: domain 1 of 1, from 223 to 242: score 7.9, E = 0.076
                   *->kayleWYkdqeksnqaqllefsd<-*
                      k yl+   +qe sn+aq+l +++
     C39E6.4   223    KRYLS---SQERSNLAQKLHLTE    242

homeobox: domain 1 of 1, from 202 to 258: score 101.5, E = 1.6e-26
                   *->RrkRTtFtpeQleeLEkeFqknpYPsreeReeLAkkLgLterqVkvW
                      +++RT+F+++Q+ +LE +F++ +Y+s++eR  LA+kL+Lte+qVk+W
     C39E6.4   202    KKTRTVFSRSQVSQLEMMFECKRYLSSQERSNLAQKLHLTETQVKIW 248

                   FQNRRaKwKk<-*
                   FQNRR K K+
     C39E6.4   249 FQNRRNKFKR    258

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