hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C39H7.1
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Query:  C39H7.1  CE06942   casein kinase status:Predicted TR:Q18553 protein_id:AAB00674.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                           26.3    3.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1      17   191 ..     1   169 [.    26.3  3.3e-06

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 17 to 191: score 26.3, E = 3.3e-06
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
                      + + +klGeG+fG Vy++ +      ++A+K+     e+i+   +
     C39H7.1    17    WSIEKKLGEGGFGAVYRVFDA---TGKYAMKVEG-ANEQIQV--LKL 57

                   EiqilkrLs...HpNIvrligvfedtddhlylvmEymegGdLfdylrrng
                   E+++l++Ls+++  + +++ +  +  ++  y+vm ++++ +L d+ ++
     C39H7.1    58 EVSVLNELSkrgNRHFCKIEDKGRF-GNFNYVVMTLVGK-SLQDLNKAGV 105

                   .gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden....dgt
                   +g++s+   + i  Q l++le LH+ g +HRD+Kp N  + +++ ++  +
     C39H7.1   106 gGHMSMGCSIGIGIQSLEALEDLHNIGYLHRDVKPGNYTIGRPelneIRK 155

                   vKiaDFGLArlle.......sssklttfvGTpwYmmA<-*
                   v i DFG++r++ +++++ +    + +f GT  Y  +
     C39H7.1   156 VYILDFGMCRKFTgndgtirKPRQAAGFRGTVKYA-P    191

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