Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C41C4.2
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Query: C41C4.2 CE01517 locus:sre-2 status:Partially_confirmed SW:Q09273 protein_id:CAA88099.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Mtc Tricarboxylate carrier 686.1 1.3e-228 1
Sre C. elegans Sre G protein-coupled chemorecept 73.3 7.4e-21 1
TrbC Conjugal transfer protein TrbC 6.9 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mtc 1/1 47 371 .. 1 344 [] 686.1 1.3e-228
TrbC 1/1 397 412 .. 65 80 .] 6.9 1.6
Sre 1/1 373 596 .. 152 395 .] 73.3 7.4e-21
Alignments of top-scoring domains:
Mtc: domain 1 of 1, from 47 to 371: score 686.1, E = 1.3e-228
*->wDQsTFlGRarHFfsiTdPrtLltSekkLeeareiverYkaGedvsp
++Q+TFlGR++H+++++dPrtL++S+kkLee+ e+++++kaG +++
C41C4.2 47 FPQDTFLGRYLHCLDVIDPRTLFASNKKLEESLELLNSFKAG--TAT 91
nltvdeLWrAKklyDSafHPDTGEkvllpGRMSaqVPmNmviTgGMLtpy
n+++++LW+A+kl+++++HPDTGEkvl+p+RMS++VP+++++++GML+p+
C41C4.2 92 NVPDKSLWEAQKLKSAILHPDTGEKVLPPFRMSGFVPFGWITVTGMLLPN 141
rstParRvVFWQWfNQSfNAiVNYtNRSgdsplslsqLlvSYvaATtgAc
+s+P+ ++FWQW+NQS+NA+VNY+NR++++p++ls+++++Y+aA+t+Ac
C41C4.2 142 PSWPT--LLFWQWMNQSHNACVNYANRNATQPQPLSKYIGAYGAAVTAAC 189
gaALGLnklvKklpnltPtsklLlgRLVPFaAVAaANiiNiplMRqnElr
++++GL++++Kk+++l+Pt++++++R+VP++A+++A+++N+++MR+nEl+
C41C4.2 190 SISGGLTYFIKKASSLPPTTRIIIQRFVPLPATSLASSLNVICMRWNELE 239
SSGeGIeVfDedTGkvvGkSkkSAVAAklAiaqVvLSRiamAvPlMvlpP
+GI+V+++dTGkvvG+Sk+ AAk+A+++++++R++++vPl+++pP
C41C4.2 240 ---TGIQVYEKDTGKVVGVSKV---AAKQAVTDTTMVRAFLPVPLLLMPP 283
limnrLeHPTRGkrafyrrrpwlQKYSeiPvqtlLcglvLafatPlacAl
+im++Le +++++++++++ +i+v++++c+l++a+++P+a+Al
C41C4.2 284 CIMPYLE-----RFKWVTKTQVR----HIFVNAIVCTLSFAVSLPVALAL 324
FPQksairyTVqCGLyhvskLEpelqqlinklgqktppevVYyNKGL<-*
FPQ+sa+ryTVqCGLy++++++++++ql+++l+qkt+++ +YyNKGL
C41C4.2 325 FPQESAVRYTVQCGLYYLNNFQISREQLEPELQQKTKNSLLYYNKGL 371
TrbC: domain 1 of 1, from 397 to 412: score 6.9, E = 1.6
*->lSllfaAsnllssffg<-*
+S+ + ++n+++++fg
C41C4.2 397 VSIVLTSTNSIAGIFG 412
Sre: domain 1 of 1, from 373 to 596: score 73.3, E = 7.4e-21
*->laiviERlfATyfikDYEkkrRiwIpgilLiiilqffsissatilyl
l +++ER++AT+ +++YE+++++w + i L++ + +i+ + l++
C41C4.2 373 LLLAVERFLATIWVSTYESVQHKWVS-IVLTSTNSIAGIFGS--LLF 416
llfnklpflvlvifwiisniislvilylfvkkiNkkwlkeienprrtsnr
++ ++ + v +++ + +n++s +ly+++++ Nk+ + +++ +t
C41C4.2 417 HYELIFDTAVWCSLGLCFNFVS-IFLYVILFNSNKSKIELCQTREIT--Q 463
hkYtLsqRFQvkENiralkllkrlvfvilffiilcglgllllsfdls.ed
+YtLs RFQ+ EN++ + ++k+ ++v+++f+ l l++++ + ++ d
C41C4.2 464 -SYTLSLRFQLNENLKIMNWIKNSILVVTCFNTLLAGFLIASNNEYLkND 512
vipeldpilnhifensiflypllipitimfsvpaWrkefrkilpkiglrr
+ l++ +++++++ i +y +++++++ ++r++f ++ p
C41C4.2 513 YPV-LVKCCHTFLNLGIAIYAQVVFFVAILADRHFRTYFLRFKP------ 555
klinKlsrkiqlrkkkitlksttgeddkdkrvslEtdtYFnQLnksWi<-
++++++ +++ + + + k+ + s Et++YF+ L W
C41C4.2 556 -------IRVFTKPFFGRIFPEDFKIKKILSTSDETNVYFSKLSLQWD 596
*
C41C4.2 - -