hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C41C4.4
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Query:  C41C4.4  CE01519  locus:ire-1 serine\/threonine kinase status:Partially_confirmed SW:Q09499 protein_id:CAA88100.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pkinase       Protein kinase domain                     179.5    5.5e-50   1
Bacterial_PQQ PQQ enzyme repeat                          57.2      1e-14   2
Ku_N          Ku70/Ku80 N-terminal alpha/beta domain      4.8        3.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Bacterial_PQQ   1/2      43    80 ..     1    37 []    29.2  1.1e-06
Bacterial_PQQ   2/2     223   260 ..     1    37 []    28.0  2.4e-06
pkinase         1/1     534   794 ..     1   294 []   179.5  5.5e-50
Ku_N            1/1     845   876 ..   229   260 .]     4.8      3.2

Alignments of top-scoring domains:
Bacterial_PQQ: domain 1 of 2, from 43 to 80: score 29.2, E = 1.1e-06
                   *->gvvyvgtadGylyAlDadTGkvlWkfktggpvds.pvt<-*
                       ++ v t dG+l+AlD +TG+++W+ +++++ +s++++
     C41C4.4    43    STILVSTIDGRLRALDSETGEIKWTLQEEPVLRSpSAV    80

Bacterial_PQQ: domain 2 of 2, from 223 to 260: score 28.0, E = 2.4e-06
                   *->gvvyvgtadGylyAlDadTGkvlWkfktggpvds.pvt<-*
                       + y+ + +Gy+  +D++TG+++W+ ++++pv++ ++
     C41C4.4   223    FKHYASSSHGYILTFDRETGEMRWEQDLKQPVVAlYLL    260

pkinase: domain 1 of 1, from 534 to 794: score 179.5, E = 5.5e-50
                   *->yelleklGeGsfG.kVykakhkdktgkiVAvKilkkekesikekrfl
                      y    +lG G  G++Vy+++     g++VAvK +    e +k   +
     C41C4.4   534    YSPSDILGTGCEGtVVYRGTFD---GREVAVKRVV--SEFVKF--AH 573

                   rEiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrrng.
                   rE+ +l++ ++Hp+++r++ +   +++  yl +E++   +L+dy+ ++
     C41C4.4   574 READLLRESDtHPHVIRYFCMES-DSQFRYLALELCIA-SLNDYVEQKEv 621

                   .gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden....dgt
                   + +     +++i++Q   Gl++LH  +ivHRD+Kp+N+L++  ++++ +
     C41C4.4   622 qQNV-TIALRDIMKQATDGLAHLHASKIVHRDMKPQNVLITMAsqrgEMR 670

                   vKiaDFGLArlle......sssklttfvGTpwYmmAPEvilegrgysskv
                     i+DFGL++ + +++++ s + ++++ GT +++ APEv l +   s +v
     C41C4.4   671 AVISDFGLCKRVQpgknsiSRGIASGLAGTDGWI-APEV-LISASTSYPV 718

                   DvWSlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelp
                   D+ SlG+i+y++lt g                         + Pf
     C41C4.4   719 DIFSLGCIFYYVLTSG-------------------------THPFGK--- 740

                   ktridpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsa
                     + +  ++++++ ++   +l   + +S  + dL++++Ln+ P  R+
     C41C4.4   741 --SLHRQANIVNGEYT-LNKLADLDDWSL-ADDLISSMLNVEPLHRL--- 783

                   takeilnhpwf<-*
                   ta ++lnhp+f
     C41C4.4   784 TADAVLNHPFF    794

Ku_N: domain 1 of 1, from 845 to 876: score 4.8, E = 3.2
                   *->sdellnfqvrefskledllsrlrakqkakRal<-*
                      +++l  f+++++ +++dll+  r k++ +R l
     C41C4.4   845    KEDLRKFRTYKSFSVRDLLRAMRNKKHHYREL    876

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