Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C41C4.5
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Query: C41C4.5 CE23585 locus:unc-105 Amiloride-sensitive sodium channel status:Partially_confirmed SW:Q09274 protein_id:CAA88101.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ASC Amiloride-sensitive sodium channel 846.6 8.3e-251 1
CBM_19 Carbohydrate binding domain (family 19) 5.8 4.3 1
Propep_M14 Carboxypeptidase activation peptide 4.1 8.8 1
Hanta_G2 Hantavirus glycoprotein G2 1.2 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CBM_19 1/1 325 338 .. 1 14 [. 5.8 4.3
ASC 1/1 34 678 .. 1 622 [] 846.6 8.3e-251
Hanta_G2 1/1 656 692 .. 449 486 .] 1.2 9.6
Propep_M14 1/1 747 761 .. 68 82 .] 4.1 8.8
Alignments of top-scoring domains:
CBM_19: domain 1 of 1, from 325 to 338: score 5.8, E = 4.3
*->iTTTalaTAsSAlf<-*
+TTT ++T + Al+
C41C4.5 325 VTTTEAPTVTQALG 338
ASC: domain 1 of 1, from 34 to 678: score 846.6, E = 8.3e-251
*->FCenTTiHGlrriftskrnrlrRafWlllvlvslglllwQigilisk
F +++T+HG+++ +t+ + ++R+fW++++ ++l +ll+Qi+ lisk
C41C4.5 34 FEKQSTFHGISHAATA-DG-KWRWFWYTAFTICLLALLIQIFFLISK 78
YlskptvsvnielkfPveklpFPaVTiCNlNPykysevrsn.ivlelndt
Y+++ ++v++ lkf e++pFP++TiCNlNPyk+s+++sn++ +++++
C41C4.5 79 YRQYG-KTVDLDLKF--ENAPFPSITICNLNPYKKSAIQSNpNTKAMMEA 125
ldaftllelysgsksemdalefnssrkrrskraqq.vrn.gks.lrg.rf
++++ ++ +++ e++a+++++++++++k ++++++++gk++lr++r+
C41C4.5 126 YSRRIGSGDKT----EGIAAALSATGGLHAKVRRAkRKAkGKPrLRDrRY 171
plvfadcrldsqecv.deresrrtes.............lieipesvcic
+++fa+c++d +++++d+++s++++++++ + +++++ ++++ ++s+c c
C41C4.5 172 HQAFAQCLCDIEQLTgDRKGSCFAAFkgkieidtnntagFMNLHTSRCLC 221
fgdrwkvgfwlCs.nstWe.keCs.Cndh.fC..................
+ d++ +++w+C+++s+W++k+Cs+C+d++++ + + ++++ ++ +++
C41C4.5 222 QLDTVSKALWPCFpYSSWKeKLCSeCVDNtGHcpmrfykgnelyenikeq 271
....................pcic.s.dlecv.k.t.triwepl.ykq.s
+ +++ ++ ++++++++++ s+++e+++++++++i+++l+++q++
C41C4.5 272 vdlclchkeynhcvstrddgIILEiSpNDELNdLdIgKKIASQLsAQQeK 321
.aepep.e.metcedqgfssgtdevaewykakenlifaqaalseqfrisl
+ae++++e ++ ++++gf++ td++a++++a+enl+fa+ ++se++++s+
C41C4.5 322 qAEVTTtEaPTVTQALGFEELTDDIAITSQAQENLMFAVGEMSEKAKESM 371
sysleeliltCsFngesCdicrdFttfidpsyGnCYtFNsnrstsiyrde
sy l+el+l+CsFn+++C+++rdFt+++d ++GnCYtFN+nr
C41C4.5 372 SYELDELVLKCSFNQKDCQMDRDFTLHYDNTFGNCYTFNYNR-------- 413
genlltssrpGpleyGLrlvLdvnqdeylPtteatpdalfetsfeaGvrv
+ + +s+r+G+ +yGLr++L++n++eylPttea+ G+r+
C41C4.5 414 -TAEVASHRAGA-NYGLRVLLYANVSEYLPTTEAV-----------GFRI 450
fiHeqdevPfpdsfGysappGfessigvklkqltrLpvelkapyGnCted
++H+++ vPfpd fGysap+Gf+ss+gv++kq++rL+ +pyG+C+++
C41C4.5 451 TVHDKHIVPFPDAFGYSAPTGFMSSFGVRMKQFIRLE----PPYGHCRHG 496
gedvpvenlYiyiytnksYsieaClrsCfqryivekCGCadpryPlyesp
ged + ++yt+++Ys+eaC+rsC q+ ive CGCadp+yP++e+
C41C4.5 497 GEDAAT-----FVYTGFQYSVEACHRSCAQKVIVEACGCADPMYPVAEMF 541
lngakyCtpekhidcgccylklldtflqeklgaksndfsvecqckCkqpC
+n++k+C+++++++++c+ +++l+ ++++ +g ++++ +c+C+qpC
C41C4.5 542 GNNTKPCQAVNMDQRECLRNTTLWLGELYSKG----KEAIIPDCYCHQPC 587
neteYtvtySyakwPSaasedwlgpvlskfesekeendlyrnNiamlnIf
+et+Y+vtyS a+wPS++++++ + + + ek++++ +am++If
C41C4.5 588 QETNYEVTYSSARWPSGSAKVMECLPGDFLCLEKYRKN-----AAMVQIF 632
feeLnYesikEspaygvvnLLSdiGGqlGLflGaSVlsvlElielf<-*
+eeLnYe+++Espay+++++L+d+GG GL++GaSV+s+lE++ l+
C41C4.5 633 YEELNYETMQESPAYTLTSVLADLGGLTGLWIGASVVSLLEIVTLI 678
Hanta_G2: domain 1 of 1, from 656 to 692: score 1.2, E = 9.6
*->lGilnGnWvvvavLvvlLilsilLfsllCPrRskkkks<-*
lG l G W+ v+ +l i+ +++f+ +R k+k s
C41C4.5 656 LGGLTGLWIGASVVSLLEIVTLIVFATQAYVR-KRKGS 692
Propep_M14: domain 1 of 1, from 747 to 761: score 4.1, E = 8.8
*->evlIeDVqelLeeqf<-*
++lIeD+ +++eq
C41C4.5 747 SILIEDLPPAIQEQS 761