Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C42D4.3
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Query: C42D4.3 CE04191 status:Partially_confirmed TR:Q18572 protein_id:AAA83347.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DB DB module 207.6 1.9e-58 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DB 1/1 86 189 .. 1 124 [] 207.6 1.9e-58
Alignments of top-scoring domains:
DB: domain 1 of 1, from 86 to 189: score 207.6, E = 1.9e-58
*->CCesdrkvpeeClskkCsfntysksalnmvvqkFkqlmffkqddsCp
CCe dr++p++Cls kCs++ y+ksal q+m+fkq dsCp
C42D4.3 86 CCE-DRNLPDSCLS-KCSYRSYTKSAL--------QSMYFKQ-DSCP 121
lkgkalpemlfCAAqgrDHtdCClrnGVttPqTlaGkkCLtfCdqspgPR
+ +a+++++fCAAqg+DHt+CC+rn V t TlaG+kC+tfCdq+pg
C42D4.3 122 M--QAAADIQFCAAQGKDHTACCARNAVGT--TLAGNKCFTFCDQRPG-- 165
RFWfvtqldksYvpCldrfesIkqCFy<-*
+vtqld+sY+ C+drfe++k CFy
C42D4.3 166 ---NVTQLDMSYLACYDRFENMKACFY 189