Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C43E11.3
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Query: C43E11.3 CE30503 status:Partially_confirmed TR:P91152 protein_id:AAB37626.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SET SET domain 155.5 8.9e-43 2
WW WW domain 40.2 1.5e-09 1
AT_hook AT hook motif 10.5 0.34 1
DUF622 Protein of unknown function, DUF622 4.8 6.3 1
Ribosomal_S3_C Ribosomal protein S3, C-terminal domai 4.0 4.8 1
RTX RTX N-terminal domain 0.7 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AT_hook 1/1 50 60 .. 3 13 .] 10.5 0.34
SET 1/2 2 670 .. 163 183 .. -21.7 5.9e+04
RTX 1/1 743 752 .. 658 667 .] 0.7 7
SET 2/2 677 811 .. 1 265 [] 171.2 1.7e-47
Ribosomal_S3_C 1/1 1326 1354 .. 1 31 [. 4.0 4.8
WW 1/1 1362 1391 .. 1 30 [] 40.2 1.5e-09
DUF622 1/1 1505 1526 .. 1 23 [. 4.8 6.3
Alignments of top-scoring domains:
AT_hook: domain 1 of 1, from 50 to 60: score 10.5, E = 0.34
*->kRGRPrKaata<-*
kRGRP+K +t+
C43E11.3 50 KRGRPPKIKTD 60
SET: domain 1 of 2, from 2 to 670: score -21.7, E = 5.9e+04
*->fsl............................................
f+++ ++++++ ++++++ ++++ ++++ +++ +++++++
C43E11.3 2 FQRkvvlpkkrtemvqtrrktaaavqdggavkenkakppapqtptkr 48
..................................................
+++++++ +++ ++ ++++++++ +++ +++++++ +++ ++ +
C43E11.3 49 akrgrppkiktdantlntpstssnlvddklliesesqdsiltneadsfle 98
..................................................
++ ++ +++++ +++ +++++++ +++++++ + ++++++++ + +
C43E11.3 99 keveeiedssdilpdkinspekpsvlvkrrsstrlkvktdedekdvpvni 148
..................................................
+ ++++ + +++++ +++++++++++ + ++ ++ ++++++++ +
C43E11.3 149 evavleeksiqieptspahpedpqpstsslplvepiedivepneptssad 198
..................................................
++ ++ ++++ +++++ +++ ++++++ + ++++++++++++ ++++
C43E11.3 199 ppvsnikdedikeeeplikkpasdesesmdiansesgndsdsseadprti 248
..................................................
++ + + +++++++ ++++ + + ++++++++++++++ ++ ++++ ++
C43E11.3 249 psfsiplpdtpppnfakrgeihvdvdqknskqsgesqspwerareksasn 298
..................................................
+ ++++ ++++ + ++ ++ ++++ ++ +++++++ + +++ ++++++
C43E11.3 299 plssptmsrprihflhpayqsftndsvsplpppppepaparekvenggpt 348
..................................................
+ + + ++ + + +++ +++++++++++ +++ + ++ +++++ ++
C43E11.3 349 tfkmtfkkaanipilktsafeqpsspppsssvsssislsevnsstsiase 398
..................................................
+++ +++++ + + +++ ++++ + ++ + + ++ ++ ++++ +++
C43E11.3 399 sspakrssnfdltasnelpppqmvelpklsffnmppavrsaeddsamtse 448
..................................................
++ +++++ +++++ +++++++ ++++ + + +++ ++ +
C43E11.3 449 epilllrspnsatpdddalflttppppkmteseiqalkvatekvnqviar 498
..................................................
+++++++ ++++++++ ++++++++++++++++++++++++++++++++
C43E11.3 499 redsekdvrhredrddydrrrddrdrrsrktdserndqrgrqredderra 548
..................................................
++++++ ++++++++++ + ++++++++++++++++ +++++++++++++
C43E11.3 549 rererevtkrhdrereemrlqkqkdeerrkkdeeeriqkendekkqkede 598
..........................................ve......
+ ++++++ ++++ + ++ + ++++ +++ +++++++ ++e +++++
C43E11.3 599 akmeeekkkikeeemkipefeliseskyltrnankkktesltCEchrtgg 648
.....gv.nreeenseeelglv<-*
+ ++++ nr+ + ++++++ v
C43E11.3 649 ncsdnTCvNRAMLTECPSSCQV 670
RTX: domain 1 of 1, from 743 to 752: score 0.7, E = 7
*->dtGaLTIDgt<-*
dtG TID+t
C43E11.3 743 DTGVYTIDAT 752
SET: domain 2 of 2, from 677 to 811: score 171.2, E = 1.7e-47
*->vqkgrwarlegfkt....GwGlrAtedIpkGefiiEYpGelitseea
+ k+++a++e f t++ +G GlrA +dI+kG fiiEY+Ge+++++++
C43E11.3 677 FAKKKYAAVEAFHTgtakGCGLRAVKDIKKGRFIIEYIGEVVERDDY 723
ekreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPkt
ekr ky++d+ +k++ Yl+d+
C43E11.3 724 EKRK-----TKYAADKKHKHH--YLCDTGV-------------------- 746
ydsPlfWseeellLkGTllevdeeelkeykdllaeeievflqlklFpdve
C43E11.3 - -------------------------------------------------- -
teefsyedylWaasivSRafslvegvnreeenseeelglviDatrkGNla
++iDat +GN++
C43E11.3 747 --------------------------------------YTIDATVYGNPS 758
RFiNHSCsPNcevqvvfvdgedlgtsseeetDAeekaglepgdprivifA
RF+NHSC+PN+ +++++v + + +r+++f+
C43E11.3 759 RFVNHSCDPNAICEKWSVPRTPG------------------DVNRVGFFS 790
lrdIkaGeELtydYgydlsnge<-*
+r IkaGeE+t+dY+ ++ +g+
C43E11.3 791 KRFIKAGEEITFDYQ-FVNYGR 811
Ribosomal_S3_C: domain 1 of 1, from 1326 to 1354: score 4.0, E = 4.8
*->sianqLenrvsfRramkkaieramkagkyak<-*
i+ q+e++ + ++a+k a +ra +++ ak
C43E11.3 1326 LIRIQIERKTAQKEAIKAACRRANEEE--AK 1354
WW: domain 1 of 1, from 1362 to 1391: score 40.2, E = 1.5e-09
*->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
+ W +k++ G +YYyN++Tk+TqW+ P
C43E11.3 1362 TKYVWAIAKSEAGETYYYNKITKETQWTAP 1391
DUF622: domain 1 of 1, from 1505 to 1526: score 4.8, E = 6.3
*->aRkTSsqvpdiskkefkkErlEe<-*
+R+ Ss v+ efk+E lE+
C43E11.3 1505 HRNGSSSVSERRMREFKHE-LER 1526