Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C43E11.4
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Query: C43E11.4 CE08682 elongation factor Tu status:Partially_confirmed TR:P91150 protein_id:AAB37624.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP_EFTU Elongation factor Tu GTP binding domain 269.6 4.1e-77 1
GTP_EFTU_D3 Elongation factor Tu C-terminal domain 91.6 1.1e-24 1
GTP_EFTU_D2 Elongation factor Tu domain 2 69.9 3.6e-18 1
HEAT_PBS PBS lyase HEAT-like repeat 8.2 2.8 1
Glu_synthase Conserved region in glutamate synthase 2.3 9.1 1
cobW Cobalamin synthesis protein/P47K 1.9 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
cobW 1/1 166 191 .. 186 213 .. 1.9 8.2
Glu_synthase 1/1 185 196 .. 398 409 .] 2.3 9.1
HEAT_PBS 1/1 203 228 .. 1 27 [] 8.2 2.8
GTP_EFTU 1/1 43 233 .. 1 298 [] 269.6 4.1e-77
GTP_EFTU_D2 1/1 245 323 .. 1 96 [] 69.9 3.6e-18
GTP_EFTU_D3 1/1 327 422 .. 1 113 [] 91.6 1.1e-24
Alignments of top-scoring domains:
cobW: domain 1 of 1, from 166 to 191: score 1.9, E = 8.2
*->IvlNKtDLvdeeedleklearlrkslnp<-*
I +NK+DLv+e+ dl+ +e + r +l +
C43E11.4 166 IFINKADLVEED-DLDLVEMEAR-ELLS 191
Glu_synthase: domain 1 of 1, from 185 to 196: score 2.3, E = 9.1
*->EvrellaqlGfr<-*
E rell+ +Gf+
C43E11.4 185 EARELLSLHGFN 196
HEAT_PBS: domain 1 of 1, from 203 to 228: score 8.2, E = 2.8
*->vRraAaraLgalgdpeAipaLleaLed<-*
+R +A+ aL +i++L++aL++
C43E11.4 203 IRGSALSALEGQDI-SCIERLIDALDS 228
GTP_EFTU: domain 1 of 1, from 43 to 233: score 269.6, E = 4.1e-77
*->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge
k +N+g+iGH+DHGKTTLt +++ + ++ ++ ++
C43E11.4 43 KINVNVGTIGHIDHGKTTLTSAITRVQAK----------KGFAKH-- 77
rkgsfklarviDkmeeEreRGITIksahvsfewkdededletkakegkkr
+k ++ iDk +eE+ RGITI++ah+ +e
C43E11.4 78 ----IK-FDEIDKGKEEKKRGITINVAHIGYE------------------ 104
gnelTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmpGfk
++ r++++ D+PGH DF+k++i G++q+D A+LV++A++Gvm+
C43E11.4 105 ----SPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME--- 147
GQTrehlrlArqlgvppiilvVaiNKiDrvgaelklppvpeelyeeleke
QT+ehl lA+q+gv+ +++++iNK D+v e+ ++++e+e
C43E11.4 148 -QTKEHLILAKQVGVK--NMAIFINKADLV---------EEDDLDLVEME 185
vrellkpIgedfgvidlilaevaeddlmeyyfegeeipiipiSalggdni
+rell++ +f+g+++p+i++Sal ++++
C43E11.4 186 ARELLSL----------------------HGFNGDATPVIRGSALSALEG 213
delsiknkLkkddlslvPwykgvSalknkgrkrgaiptLLealddylPsP
++ s +i+ L++ald+ lP P
C43E11.4 214 QDIS------------------------------CIERLIDALDS-LPEP 232
e<-*
C43E11.4 233 D 233
GTP_EFTU_D2: domain 1 of 1, from 245 to 323: score 69.9, E = 3.6e-18
*->adVfkikytmDpyrrTSdGrGtVatgRvesGtlkkGdeveiggngt.
a + i+ GrGtV++g++e+G+lkkGd+vei +g++
C43E11.4 245 ASKTAIT-----------GRGTVIVGTLERGVLKKGDKVEI--KGDg 278
kkkdvpevtrVtslemfhg.ldeavaGdnaGlivagiglkdaaikrGdvl
++ ++t+ + +++f ++++e++aGd +G++++g++ + +krG+
C43E11.4 279 QT----LQTTASDIQVFGKsVKEVRAGDHCGVLCRGVKGDT--VKRGMWA 322
a<-*
+
C43E11.4 323 G 323
GTP_EFTU_D3: domain 1 of 1, from 327 to 422: score 91.6, E = 1.1e-24
*->sikphtkFeAqVyvLnkeeqIggRhtPffdgYtpqfycrTtdvtgki
++++++++ + y L+ e +gR+ ++ g+t +yc T+d++g+
C43E11.4 327 AVTITNRVKVELYLLSEAE--NGRKIGIRTGFTDKMYCSTWDQVGR- 370
dkltgkvkevleegpemvmpGDnvivtvelikPiavEtFseYPpggRFAi
++ +e +mpG+++ +tv l+k ++++ +g+ F++
C43E11.4 371 FDMS----------NELLMPGEHTSATVLLMKDMPLR------KGMPFTL 404
REGG..rTVGaGvVteil<-*
REG +++T++ G++++++
C43E11.4 405 REGSskTTIARGIISDLE 422