Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C43E11.1
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Query: C43E11.1 CE23592 status:Partially_confirmed TR:P91156 protein_id:AAB37630.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SAP SAP domain 53.6 1.3e-13 1
rrm RNA recognition motif. (a.k.a. RRM, RBD, 20.2 0.00017 1
tRNA-synt_1b tRNA synthetases class I (W and Y) 3.8 4.4 1
Orexin_rec2 Orexin receptor type 2 1.8 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SAP 1/1 13 47 .. 1 35 [] 53.6 1.3e-13
tRNA-synt_1b 1/1 20 48 .. 309 337 .] 3.8 4.4
Orexin_rec2 1/1 65 89 .. 1 26 [. 1.8 9.1
rrm 1/1 296 363 .. 1 77 [] 20.2 0.00017
Alignments of top-scoring domains:
SAP: domain 1 of 1, from 13 to 47: score 53.6, E = 1.3e-13
*->lskLkVseLKeeLkkrGLstsGkKaeLieRLleal<-*
ls+LkV+eLKeeL+ r Lst+G+Ka+L+eRL+eal
C43E11.1 13 LSSLKVTELKEELENRQLSTKGVKAVLQERLREAL 47
tRNA-synt_1b: domain 1 of 1, from 20 to 48: score 3.8, E = 4.4
*->elladevtglvhggelKkaaaealnalle<-*
el+++ +++ ++ + +K ++e l+++l+
C43E11.1 20 ELKEELENRQLSTKGVKAVLQERLREALA 48
Orexin_rec2: domain 1 of 1, from 65 to 89: score 1.8, E = 9.1
*->LGvHrRqeDRLaRGRtstEsRKsLtt<-*
G Rq La R tEs s tt
C43E11.1 65 -GYLARQSAALAEARKRTESEASGTT 89
rrm: domain 1 of 1, from 296 to 363: score 20.2, E = 0.00017
*->lfVgNLppdvteedLkdlFsk.fGpivsikivkDhiekpketgkskG
+ +++L++ te +L++ +k++G+iv++ + k k
C43E11.1 296 VHIRGLTRPFTEGQLRAEIQKnCGEIVDLWMDKV-----------KS 331
faFVeFeseedAekAlealnG.kelggrklrv<-*
++FV+ s dA + ++a+n+ + +g++ r
C43E11.1 332 HCFVKLNSDADAGNVISAMNNvVWPDGNPKRL 363