Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C43E11.5
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Query:  C43E11.5  CE08683    status:Partially_confirmed TR:P91147 protein_id:AAB37621.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              131.2    3.3e-36   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Y_phosphatase   1/1      72   332 ..     1   274 []   131.2  3.3e-36

Alignments of top-scoring domains:
Y_phosphatase: domain 1 of 1, from 72 to 332: score 131.2, E = 3.3e-36
                   *->NkeKNRykdilpyDhtRVkLkegsDYINAnyidgpqsrtlvvykkpk
                      N++ N +  i+  D+ RV    +  +    y+++          ++
    C43E11.5    72    NLPVNVRLPIPIRDNRRVLCGSDEEFFPGQYVRM----------EGA 108

                   ayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgre.eeKtCaqYW
                   +yI+ Q+P +++ +  Wr +   ++++ V+L+ ++ ++ +++ K C+ Y+
    C43E11.5   109 EYIIVQAPTKKSSKLIWRVILKDHIRILVCLCHDEQMSGSdDGK-CYTYF 157

                   Pee.ggeeggsltyGditVtlvseekk......ddddytvRtleltn.gd
                   P+e +++++ +l+ G +++ ++  e ++ + ++++ + t ++ ++ ++ d
    C43E11.5   158 PTElEQKMEAELMKGTLSIVCKAREGLsmgatkYELELTDSEVVIDKnSD 207

                   es.k.neakqeklkgetrtVthyhytgWPDhgvPesg.....pkslldfl
                   +++++n         +++++ ++h+ +W  +  P sg+  ++++ +  f
    C43E11.5   208 DPnAsN--------YKSHRLIVFHMNTWSGQ-KPTSGnaleqAQNVALFF 248

                   rkvrksqsqenes.geaspdsgprSsctgPivVHCSAGiGRTGtfiaidi
                   r+v+k+   + ++++e+            P++ ++ +Gi R+ t  ++ +
    C43E11.5   249 REVKKFEMDILRKsMENFVP---------PVMLQSFDGINRASTGWVALM 289

                   llqqleaegvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
                   ll+ +e+ +++ d++ ++k + + R+g++ t+ Q++F+  + l+
    C43E11.5   290 LLRDVEKRECF-DVPSLIKAIMKFRNGSISTYYQFCFCMAVCLN    332



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