Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C43H6.3
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Query:  C43H6.3  CE06954    status:Partially_confirmed TR:Q18587 protein_id:AAA96086.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ank      Ankyrin repeat                                  59.2    4.5e-15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ank        1/2      29    61 ..     1    33 []    32.1  2.4e-07
ank        2/2      62    94 ..     1    33 []    27.2  6.1e-06

Alignments of top-scoring domains:
ank: domain 1 of 2, from 29 to 61: score 32.1, E = 2.4e-07
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                      +G+T+  +Aa +g+++++++L++ GA++  +d+
     C43H6.3    29    NGRTAIQIAADYGQTSIIAYLISIGANIQDKDK    61

ank: domain 2 of 2, from 62 to 94: score 27.2, E = 6.1e-06
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                      +G TPL  A+  g+ + vklLlq+GAd  +
     C43H6.3    62    YGITPLLSAVWEGHRDAVKLLLQNGADRSIHAP    94



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