Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C43H6.3
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Query: C43H6.3 CE06954 status:Partially_confirmed TR:Q18587 protein_id:AAA96086.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 59.2 4.5e-15 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/2 29 61 .. 1 33 [] 32.1 2.4e-07
ank 2/2 62 94 .. 1 33 [] 27.2 6.1e-06
Alignments of top-scoring domains:
ank: domain 1 of 2, from 29 to 61: score 32.1, E = 2.4e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G+T+ +Aa +g+++++++L++ GA++ +d+
C43H6.3 29 NGRTAIQIAADYGQTSIIAYLISIGANIQDKDK 61
ank: domain 2 of 2, from 62 to 94: score 27.2, E = 6.1e-06
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G TPL A+ g+ + vklLlq+GAd +
C43H6.3 62 YGITPLLSAVWEGHRDAVKLLLQNGADRSIHAP 94