Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C44B7.8
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Query: C44B7.8 CE02546 ATP-binding protein status:Partially_confirmed TR:Q18597 protein_id:AAA68339.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 128.5 4.6e-36 1
AAA ATPase family associated with various cel 11.0 0.027 1
FCH Fes/CIP4 homology domain 5.1 5.3 1
oxidored_q3 NADH-ubiquinone/plastoquinone oxidoreduct 4.1 4.1 1
SMC_N RecF/RecN/SMC N terminal domain 3.8 4.3 1
PRK Phosphoribulokinase / Uridine kinase fami 3.2 6.6 1
ATP-bind Conserved hypothetical ATP binding protei 2.8 8.7 1
Adeno_IVa2 Adenovirus IVa2 protein 2.7 7.1 1
DEAD DEAD/DEAH box helicase 2.5 8.3 1
DUF163 Uncharacterized ACR, COG1576 0.8 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
oxidored_q3 1/1 23 34 .. 166 177 .] 4.1 4.1
FCH 1/1 359 379 .. 87 107 .] 5.1 5.3
DEAD 1/1 471 486 .. 24 39 .. 2.5 8.3
AAA 1/1 474 488 .. 1 15 [. 11.0 0.027
SMC_N 1/1 479 489 .. 32 42 .. 3.8 4.3
Adeno_IVa2 1/1 475 492 .. 93 110 .. 2.7 7.1
PRK 1/1 477 492 .. 1 19 [. 3.2 6.6
ATP-bind 1/1 474 494 .. 1 21 [. 2.8 8.7
DUF163 1/1 622 636 .. 1 15 [. 0.8 4.3
ABC_tran 1/1 472 648 .. 1 199 [] 128.5 4.6e-36
Alignments of top-scoring domains:
oxidored_q3: domain 1 of 1, from 23 to 34: score 4.1, E = 4.1
*->LvalfvvieltR<-*
+v++f++i+++
C44B7.8 23 FVGIFGCITIAK 34
FCH: domain 1 of 1, from 359 to 379: score 5.1, E = 5.3
*->nvllseteqlsklHsqlseqL<-*
n+l++e+ + ++++++lse L
C44B7.8 359 NELMQELYNNGRMMLKLSEAL 379
DEAD: domain 1 of 1, from 471 to 486: score 2.5, E = 8.3
*->egrDvlvqApTGSGKT<-*
+gr+vlv++p G GK+
C44B7.8 471 SGRNVLVCGPNGCGKS 486
AAA: domain 1 of 1, from 474 to 488: score 11.0, E = 0.027
*->gvLLyGPPGtGKTlL<-*
+vL +GP G+GK++L
C44B7.8 474 NVLVCGPNGCGKSSL 488
SMC_N: domain 1 of 1, from 479 to 489: score 3.8, E = 4.3
*->GPNGSGKSNil<-*
GPNG+GKS+++
C44B7.8 479 GPNGCGKSSLF 489
Adeno_IVa2: domain 1 of 1, from 475 to 492: score 2.7, E = 7.1
*->gvVYGPTGsGKSQLLRNL<-*
++V GP G+GKS L R L
C44B7.8 475 VLVCGPNGCGKSSLFRTL 492
PRK: domain 1 of 1, from 477 to 492: score 3.2, E = 6.6
*->vIGvaGsSGaGKTtvarri<-*
v+G+ G+GK++ r++
C44B7.8 477 ---VCGPNGCGKSSLFRTL 492
ATP-bind: domain 1 of 1, from 474 to 494: score 2.8, E = 8.7
*->ailViGpAGSGKSTfcgalyq<-*
+lV+Gp G GKS++ + l +
C44B7.8 474 NVLVCGPNGCGKSSLFRTLGE 494
DUF163: domain 1 of 1, from 622 to 636: score 0.8, E = 4.3
*->MkivlvsvGKlkpdy<-*
M+i+l +v k ++
C44B7.8 622 MNITLFTVSHRKSLW 636
ABC_tran: domain 1 of 1, from 472 to 648: score 128.5, E = 4.6e-36
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
G + + GpNG+GKS+L++++ l+p Gt++ + + +
C44B7.8 472 GRNVLVCGPNGCGKSSLFRTLGELWPVMGGTLTKPA-K----GK--- 510
erlerlrknigvvfQdptlfpnpeltvreniafglrls....lglskdeq
+ +v+Q p+ +t+r++++++ ++ + +g+s++++
C44B7.8 511 ---------LFYVPQRPYMT---LGTLRDQVIYPDTSFdmkmKGMSDKDL 548
rdrlkkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpk
+ l+++++ +Ler g + +++ ++ + LSGG+kQR+a AR++++kp
C44B7.8 549 EQMLENVQLTNILEREGGW--SAVQDWMDVLSGGEKQRIAMARLFYHKPQ 596
lLlLDEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDri
+ +LDE+T++ ++ ++++++l+re ++T+ +++H+ l +++
C44B7.8 597 FAILDECTSAVSVDVEGAMYRLCREM---NITLFTVSHRKSL-WKYHEYS 642
lvledG<-*
l+++
C44B7.8 643 LYMDGR 648
[output cut off at A = 10 top alignments]