hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C44B7.9
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Query:  C44B7.9  CE02547   peroxisomal membrane protein (PMP70, an ATP-binding transport protein) status:Partially_confirmed TR:Q18598 protein_i

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ABC_tran ABC transporter                                127.7    7.9e-36   1
AAA      ATPase family associated with various cellul    11.0      0.027   1
SMC_N    RecF/RecN/SMC N terminal domain                  3.8        4.3   1
Rad17    Rad17 cell cycle checkpoint protein              2.0          8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1     470   484 ..     1    15 [.    11.0    0.027
SMC_N      1/1     475   485 ..    32    42 ..     3.8      4.3
Rad17      1/1     472   488 ..    52    68 ..     2.0        8
ABC_tran   1/1     468   644 ..     1   199 []   127.7  7.9e-36

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 470 to 484: score 11.0, E = 0.027
                   *->gvLLyGPPGtGKTlL<-*
                      +vL +GP G+GK++L
     C44B7.9   470    NVLVCGPNGCGKSSL    484

SMC_N: domain 1 of 1, from 475 to 485: score 3.8, E = 4.3
                   *->GPNGSGKSNil<-*
                      GPNG+GKS+++
     C44B7.9   475    GPNGCGKSSLF    485

Rad17: domain 1 of 1, from 472 to 488: score 2.0, E = 8
                   *->LLtGPsGcGKSTtvkvL<-*
                      L +GP GcGKS   +vL
     C44B7.9   472    LVCGPNGCGKSSLFRVL    488

ABC_tran: domain 1 of 1, from 468 to 644: score 127.7, E = 7.9e-36
                   *->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
                      G  + + GpNG+GKS+L++++  l+p   Gt++ +  +     +
     C44B7.9   468    GTNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPA-K----GK--- 506

                   erlerlrknigvvfQdptlfpnpeltvreniafglrls....lglskdeq
                            + +v+Q p+      +t+r++i+++ r+++  ++g s+ ++
     C44B7.9   507 ---------LFYVPQRPYMT---LGTLRDQIIYPDRPLdmirKGVSDSDL 544

                   rdrlkkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpk
                   +  l+++++ ++Ler g +  +++ ++ + LSGG+kQR+a AR++++kp
     C44B7.9   545 EQMLENVQLTHILEREGGW--SAVQDWMDVLSGGEKQRIAMARLFYHKPQ 592

                   lLlLDEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDri
                   + +LDE+T++  ++ ++++++l+re    ++T+ +++H+  l +++
     C44B7.9   593 FAILDECTSAVSVDVEGAMYRLCREK---NITLFTVSHRKSL-WKYHEYS 638

                   lvledG<-*
                   l+++
     C44B7.9   639 LYMDGR    644

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