Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C44C1.4a
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Query: C44C1.4a CE04214 yeast vacuolar protein sorting protein 33 (SLP1) status:Partially_confirmed TR:Q18609 protein_id:AAA82364.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sec1 Sec1 family 729.1 2e-215 1
Apidaecin Apidaecin 8.2 0.31 1
DUF436 Protein of unknown function (DUF436) 4.5 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF436 1/1 277 294 .. 1 18 [. 4.5 1.6
Apidaecin 1/1 383 409 .. 1 28 [] 8.2 0.31
Sec1 1/1 21 540 .. 1 683 [] 729.1 2e-215
Alignments of top-scoring domains:
DUF436: domain 1 of 1, from 277 to 294: score 4.5, E = 1.6
*->kdlrtvlddlqdqselkq<-*
+ +t+++++q+++ +++
C44C1.4a 277 QNIKTLISEFQEKKHINK 294
Apidaecin: domain 1 of 1, from 383 to 409: score 8.2, E = 0.31
*->lrakPEAEPGnnRPvYiPqPRPPHPRlr<-*
+ E PGn i q RP HP++
C44C1.4a 383 -ALRFENAPGNELNSLISQLRPQHPKIH 409
Sec1: domain 1 of 1, from 21 to 540: score 729.1, E = 2e-215
*->ewKVLvlDeettpilSscltvsdLleTPVegItlverienkRepEpl
+K L++D ettp++S+ + +s++++ +++++++rienk+++E++
C44C1.4a 21 QMKLLLMDGETTPTVSCAFAQSEVMQ---KEVYIFDRIENKTSSENI 64
pdvkAiyFvsrPteenidrLiqdlrsearkpkYseyhifFtRWnvisksl
+++k+++Fv+ Pt++ni+rL+++l+ + p++s+y+++Ft n+i+k++
C44C1.4a 65 KNLKCVVFVR-PTPKNIERLVKELQ--E--PRFSQYYLYFT--NTINKYD 107
ledLaeadvaggaveavksvkEiyldFiplesDLFSLdspdenllafrll
+++Laead+++ v++v+E++ld +p+++DLF+L+ +++
C44C1.4a 108 VKRLAEADKNE----TVREVQEVFLDGVPIRKDLFTLN---------LTH 144
yspgtNmYYPNRltaeedealleriadgLftLcatlgeiPisIRykggse
+++ +++ +e++ eri +g+++L+++l++ P+ +Ry+++s+
C44C1.4a 145 IFDS---------SFTLKEEAAERIKCGIIALLLQLKKAPA-VRYQKSSP 184
raaeklAkkveqklrenlkadenslfegrrvgtGtfsktrpqLLILDRnv
++k+A++v q++r+ en+lfe+ r ++t+ LLI++R++
C44C1.4a 185 -SCKKVADDVAQFIRR-----ENGLFENSR------ADTT--LLIIERSQ 220
DpiTPLLhqlTYQAmvhDllgIennrVklekeskenktpGigekrkpdke
D++TPLL+q+TY+Am+h++l+++nnr++++ d++
C44C1.4a 221 DAVTPLLNQWTYEAMIHEMLTLTNNRCTCT-----------------DQN 253
vdLdekanDefWvelrhlnFaeVgeevkkllkefqekkdeikkkkssiGl
++L+e +Def++++ + nF+e+g+++k+l++efqekk +i+k+++si
C44C1.4a 254 IVLSEL-HDEFFARNITANFGEIGQNIKTLISEFQEKK-HINKNLESI-- 299
sGedeaAnslltddtadlkqfVkklPqlqkekglistHtslaeeilkvvk
+d +k+fV+++Pq++k +g++s+H+sl++e++++v+
C44C1.4a 300 ------------QD---MKKFVEDYPQFKKISGTVSKHVSLVGELSNLVQ 334
krYnldkllevEQdLasgtdaeGEKiKdklndiielLidkavsledkLRL
k+ nl+ ++evEQ+++s+ d+ +++n+++ lL++++++++d++RL
C44C1.4a 335 KH-NLLGVSEVEQAIVSDGDHG-----KCINLVRGLLKNTKTREVDIIRL 378
ilLYsLcknglsPenkvenllkllqhqgygpealktvsnLkklGllsskt
+lLY+L++++++ +n+++ l+ +l+ q +p+ ++tvs+L+k+G+ls+++
C44C1.4a 379 VLLYALRFENAP-GNELNSLISQLRPQ--HPKIHQTVSTLLKYGGLSRRP 425
ggddllitesksskkqseptYIQWFgkktisettrqlsgwvpfimdgven
+ ++ g+ ti++t+r+++g ++gven
C44C1.4a 426 ---------------ADLFG-----GESTIDITKRFIKG-----LKGVEN 450
lypqhhlfhnldLkssrdpailspearvnldsplipqllgrssknklted
+y+qh sp+++++++++++++l++
C44C1.4a 451 IYTQH--------------------------SPYLKNMIESCQRGRLDN- 473
vyaligpkhkrkapsktrvqkkrrsgelHAqdiIVFvvGGvTysEaralr
y+l+ +++++++ ++iIVF+vGG+Ty+Ea+++r
C44C1.4a 474 -YPLL--SNECDRM----------------DNIIVFIVGGATYEEAAYVR 504
elnkakkgkgigkrviiggTailNpkkfLdeiselg<-*
ln++++++++g+ v+++g+++lN+k+fL+e+ +++
C44C1.4a 505 SLNEKRMQGYGGPAVVLAGSSMLNTKSFLEEFANVD 540