Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C45B11.3
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Query: C45B11.3 CE05427 locus:dhs-18 alcohol dehydrogenase status:Partially_confirmed TR:Q18639 protein_id:CAA98431.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
adh_short short chain dehydrogenase 139.0 2.8e-38 2
cystatin Cystatin domain 4.6 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
cystatin 1/1 73 95 .. 1 26 [. 4.6 4.8
adh_short 1/2 12 155 .. 1 143 [. 138.5 3.7e-38
adh_short 2/2 169 201 .. 156 190 .. 1.0 31
Alignments of top-scoring domains:
cystatin: domain 1 of 1, from 73 to 95: score 4.6, E = 4.8
*->GglspaddNendpevqeaadfAvaey<-*
+++++++d + v+ a+d+Av+++
C45B11.3 73 PCVVDVRD---EAAVKAAVDAAVKKF 95
adh_short: domain 1 of 2, from 12 to 155: score 138.5, E = 3.7e-38
*->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekae.......
+gK++ +TGas+GIG++iA+ Lak+Ga++vv++ ++ + +++
C45B11.3 12 AGKTVFITGASRGIGKEIALKLAKDGANIVVAAKTATAHPklpgtiy 58
qvaaelkaelGdralfiqlDvtdeeqvkaavaqaverlGdrlDvLVNNAG
++aae+++++G al++++Dv+de++vkaav++av+++G ++D+L+NNA
C45B11.3 59 TAAAEIEKAGG-HALPCVVDVRDEAAVKAAVDAAVKKFG-GIDILINNAS 106
ilgdgppfeelseedwervidvNltGvflltravlpamdhmlkrkgGrIv
+ e+ +++ ++ + +N +G++llt+++lp ++k+k +
C45B11.3 107 AIS-LTNTEDTDMKRYDLMHSINTRGTYLLTKTCLP---YLKKGKNPHVL 152
Nis<-*
Nis
C45B11.3 153 NIS 155
adh_short: domain 2 of 2, from 169 to 201: score 1.0, E = 31
*->saYsASKaavigltrsLAlElaphgtgIrVnavaP<-*
++Y+ +K+++ + + + E++p+g I Vna +P
C45B11.3 169 VGYTMAKFGMSMCVLGHHEEFRPYG--IAVNALWP 201