Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C45H4.17
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Query: C45H4.17 CE25818 cytochrome P450 status:Partially_confirmed TR:O44706 protein_id:AAC25881.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
p450 Cytochrome P450 369.9 4.3e-115 1
S6PP Sucrose-6F-phosphate phosphohydrolase 2.3 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
S6PP 1/1 333 347 .. 1 15 [. 2.3 7.4
p450 1/1 26 491 .. 1 494 [] 369.9 4.3e-115
Alignments of top-scoring domains:
S6PP: domain 1 of 1, from 333 to 347: score 2.3, E = 7.4
*->MDrLkgsaRLmIVSD<-*
MD+ +gs RL+ +D
C45H4.17 333 MDKVIGSDRLITTAD 347
p450: domain 1 of 1, from 26 to 491: score 369.9, E = 4.3e-115
*->PpgP.plPlfGnllqlgrgkdilhsvltklrkkYGpifrlylGsrpv
PpgP plP+fGnll ++ +++ ++ + ++ kkYG+i+++++G +p
C45H4.17 26 PPGPcPLPVFGNLLSIAN-PPPGYEAFERWTKKYGDIYTFWIGNTPH 71
vvlsgpelvkevLikkgeefsgrpdeawfatlsvpfrgkgilfsdgGprW
++++ + +ke +i++ e + +++ ++ ++ +gi+ s+g ++W
C45H4.17 72 IMINTWDKIKETYIRDAETYTNKVRLPALDLFR--GGEYGIIDSNG-ATW 118
kalRrlltptfrsfgmgklkslepriqeeaddlverlrktagepgsgrvi
+++Rr+ ++t+r+fg gk + + i e +d +rl + g+
C45H4.17 119 REHRRFALSTMRDFGLGKN-LMQENILMEVQDVFARLDAKLGSE-----T 162
ditellsravlnvIcsilFgvrfdsledeealplvklvqelll...lvss
di e + +av nv++ +lFg r + ++ +++++l + + +++l+++
C45H4.17 163 DIPEVFDHAVANVVNQLLFGYR---FVGPKESEYQELKRIIEAptdLFGK 209
pdhqlldlfp.lllylpgphlrk.fkearkelkdyldklieerretlddd
p l +p + +++p +++ +fk+ r++ + +++k ie +r++ d +
C45H4.17 210 PHMFLAMNIPvIAKLMPEFMYEGpFKDFRDTAFAFFNKQIEAHRQEVDLN 259
geeeekkksprdfldalllaknaemeeekdgereselsdeelaatvldll
+ ++ +df +l + ++e++g+ +++s+ +l ++dl
C45H4.17 260 ----DLNSESTDFVETFLKEQ---KRRESEGD-SETFSNVQLSNVCMDLW 301
fAGteTTsstlswaLylLakhPevqaklreEidevigdhrkeisptydDl
fAG TT++t++wa+ + ++hPevq+k++eE+d vig++r +t +D
C45H4.17 302 FAGLNTTTNTITWAISYILHHPEVQDKVHEEMDKVIGSDR---LITTADK 348
qnmPyldavIkEtLRlypvvpnlllpRvatkDteigGylIPKGtlVivnl
+++Py +a+I+E++R + +vp l+l +++t+Dt+i+G+ IPKGt V+ +
C45H4.17 349 NDLPYFNAFINEAQRGINIVP-LNLQHATTRDTVINGFKIPKGTGVVAQI 397
yslhrDpkvfpnPeeFdPeRFldengtaivnfkrksfaflPFGaGpRnCl
+ ++ +++vfp+P++F+P+RF de g + kr + PF+ G+R+C+
C45H4.17 398 STVMNNEEVFPDPHTFNPDRFIDEHG----KLKRVEE-LAPFSVGKRSCP 442
GerlArmElflfLatlLqrFeleplpgvdpppidetpiisglvlppkpyk
Ge+lArmElflf+a +L r++ p ++ +pp +d+ + g + p +++
C45H4.17 443 GEGLARMELFLFIANFLNRYKIYP-SKEGPPSMDKSN---GALIAPRLFS 488
lkf<-*
++
C45H4.17 489 ATL 491