Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C46A5.4
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Query: C46A5.4 CE27858 peroxidase status:Partially_confirmed TR:Q18647 protein_id:AAB03144.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
An_peroxidase Animal haem peroxidase 1466.4 0 2
vwc von Willebrand factor type C domain 7.2 1 1
LEF-9 Late expression factor 9 (LEF-9) 2.9 4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LEF-9 1/1 49 74 .. 1 26 [. 2.9 4
An_peroxidase 1/2 76 612 .. 1 596 [] 582.9 2.1e-171
An_peroxidase 2/2 788 1328 .. 1 596 [] 886.5 8.3e-263
vwc 1/1 1365 1389 .. 1 33 [. 7.2 1
Alignments of top-scoring domains:
LEF-9: domain 1 of 1, from 49 to 74: score 2.9, E = 4
*->mvsFvnKeptefdLLlDpnkldnvvf<-*
m++F++ e t++ + +n+++++v+
C46A5.4 49 MIQFLPTENTKMKEICPVNQIEECVI 74
An_peroxidase: domain 1 of 2, from 76 to 612: score 582.9, E = 2.1e-171
*->rYRtlDGtCNNlenPtwGaanspfrRllpPsYdDGidaPRsrsvdgs
+YR+++G CNN +nP Ga++ ++ R+lp++Y+DGi+aPRs s++g+
C46A5.4 76 KYRSYTGHCNNVKNPLNGASYERLKRFLPADYSDGISAPRS-SKSGQ 121
pLPsaRvvSrkllsdrdfpipdpkfgtTlmvmqfGQFmaHDitktssst.
pLPs+R +S ++ + + l+ + f F++ Di++ +s++
C46A5.4 122 PLPSSRALSALFTPSPS-G--HATC--SLLIAPFLSFIYDDIVHVPSNRi 166
.......sPiEengealeCckcdspvspqlshpeCfPIpvppdDPffgql
+++ ++ +++ +l+Cc+ d +shpeCf+Ipvp+dD +
C46A5.4 167 fkrdfygN---DKAMPLPCCRGD------NSHPECFEIPVPEDDT-LQSK 206
gvrClpFvRSlpaprtgpqcrlGgpReQlNqaTayiDaSpiYGssaeear
+v+Clp+ RSlp+p p+c + g+R+Q N++T+y+D+S+iYGs++ +
C46A5.4 207 NVKCLPYSRSLPVPN--PKCSF-GQRQQANMVTSYLDLSQIYGSTEGIVK 253
klRaFqgGlLktspdnggpvrlgrdllPldentqdcgsCvyprsaagsgC
k+R+ ++G+L + +g lg +P++ + s + rs++g++C
C46A5.4 254 KMRLHKNGKLALRAVGGFNNQLG--VPPANLD----SSIC--RSSTGKPC 295
fiaGDdRvnlqpgLaaLHtLflREHNRiAdaLkalNPhWdDErlFQEARk
+aG + n+ p+ a+ t++ R+HN iAd+L+ +NPhWdD+++F+EAR+
C46A5.4 296 LLAGNNKINFLPTSGAIYTIWMRQHNVIADKLASVNPHWDDQKVFEEARR 345
IviAqmQhItynEyLPilLGrelmkkMrANWyGLLGfgLvygplksGyVg
I iAq+QhIt+nE +P+l G+e ++ g + ++k+G
C46A5.4 346 ITIAQFQHITFNEMVPVLVGKEQLRV----------MGIK--LQKNG--- 380
yyngYdpnvQYnpsianEFatAAFRfGHslipgkfplvdendkiyfgkpi
y+ gYd n+ + s +n Fa+AA f+ +l+p+ f++ d+ + +
C46A5.4 381 YDSGYDINI--DSSASNVFASAAGQFFLTLLPSQFNIEDKR-----FSTK 423
snlsgsvrLsdlffnpselylilaeggvdqllrGlatqpaGrmLnrvDrf
s+ +L +f++p+ +y+ +g +d +l l++ p+ + + +
C46A5.4 424 SE-----SLLKHFNDPALIYE---KGRIDGMLKFLLNAPI--E--KPGLH 461
itdevtnkLFgtrgeppfglDLasinIqRGRDhGlpsYNeyRefCGLpra
+++++ + +++ ++D ++ Iq GRDhGlpsY ++R fC L
C46A5.4 462 SSPLLRTAFQKKD--IADSVDIIAMVIQMGRDHGLPSYLQWRTFCKLDDF 509
tsFeDLtdlispdeenlarLkslYendvdDvDLyVGgllEkpvpGglvGp
sF L + + p +n+ ++lYe +++D+D++VGgl+E+p +G+l+Gp
C46A5.4 510 SSFLALQTIFKP-SVNISDFERLYE-SPEDIDVFVGGLSEQPTKGSLLGP 557
TfaCIiaeQFqRlrrGDRFwYEngrgkpsgFTpeVQLaeiRKtsLarliC
TfaC +a Q++ ++rGDRFwYEn ps FT + Q++eiRKt++ar+iC
C46A5.4 558 TFACLFAHQMAQTKRGDRFWYENF-VSPSAFTVD-QIDEIRKTTMARIIC 605
dNtdvlt<-*
dNtd t
C46A5.4 606 DNTDTVT 612
An_peroxidase: domain 2 of 2, from 788 to 1328: score 886.5, E = 8.3e-263
*->rYRtlDGtCNNlenPtwGaanspfrRllpPsYdDGidaPRsrsvdgs
+YRt+ G+CNNl+nP +G+a++ +rRll P+YdDG+d+PR+rsv gs
C46A5.4 788 KYRTYSGWCNNLKNPKFGNAFTQMRRLLDPAYDDGFDTPRTRSVLGS 834
pLPsaRvvSrkllsdrdfpipdpkfgtTlmvmqfGQFmaHDitktsssts
+LPsaR +S+ ++sd+ +++kf T+m+mqfGQ ++HD+ +++ s++
C46A5.4 835 ELPSARKISNIVHSDAP--KFHVKF--THMLMQFGQILDHDMMHSPISRG 880
PiEengealeCckcdspvspqlshpeCfPIpvppdDPffgq....lgvrC
+++++l+C++cds q+ + +CfPI+++++DPff ++++ + rC
C46A5.4 881 ---PKNTILNCSSCDSA---QTLSIHCFPIKIEANDPFFPSkhsdGRPRC 924
lpFvRSlpaprtgpqcrlGgpReQlNqaTayiDaSpiYGssaeearklRa
+pF+RSl+a q l g+R+QlNq+T+++DaS iYGs+ +ea+klR+
C46A5.4 925 MPFARSLLA-----QVSL-GFRNQLNQLTSFLDASTIYGSTQCEANKLRL 968
FqgGlLktspdnggpvrlgrdllPldentqdcgsCvyprsaagsgCfiaG
F +G+L +++ + + l+ + ++e dc+s+ +++ +Cf+aG
C46A5.4 969 FSDGKLNFTDLGFNKEALP---QGNQER--DCRSVL---QNRQRRCFVAG 1010
DdRvnlqpgLaaLHtLflREHNRiAdaLkalNPhWdDErlFQEARkIviA
D+R n+qpgL+a+H +flREHNRiA+ Lk++N W+DE+lFQE+R+I+iA
C46A5.4 1011 DERSNEQPGLTAIHNIFLREHNRIARYLKQINNFWSDEKLFQESRRINIA 1060
qmQhItynEyLPilLGrelmkkMrANWyGLLGfgLvygplksGyVgyyng
q+QhI+y E+LP++LG ++m+k gL p+++G y++g
C46A5.4 1061 QLQHIIYKEWLPVVLGCQNMEK----------WGLM--PQTAG---YFEG 1095
YdpnvQYnpsianEFatAAFRfGHslipgkfplvdendkiyfgkpisnls
Yd ++ +++i++E +t+AFRfGHsli+g f++++ n +++++n
C46A5.4 1096 YDDQC--DATISQEMSTSAFRFGHSLIRGVFTRMNDN-----FQNMTN-- 1136
gsvrLsdlffnpselylilaeggvdqllrGlatqpaGrmLnrvDrfitde
v+L ++f nps +y+ + +g ++++l+Gl + ++ m ++Dr+i +
C46A5.4 1137 -HVNLTETFSNPSPVYD-KNSGHMESILMGLIGANS--M--AFDRHIVTA 1180
vtnkLFgtrgeppfglDLasinIqRGRDhGlpsYNeyRefCGLpratsFe
v+n+LF ++g p +glDL ++nIqRGRDhG+++YN+yR++CGL++a F
C46A5.4 1181 VRNHLFAKPGGPLTGLDLPAVNIQRGRDHGVQGYNAYRKHCGLRKASAFS 1230
DLtdlispdeenlarLkslYendvdDvDLyVGgllEkpvpGglvGpTfaC
DL d++++ e +++L+++Y+ +vdD+DL++G+++E p +G+lvGpT+aC
C46A5.4 1231 DLRDVMNS--EAVTALETAYA-HVDDIDLFPGIMSESPTRGSLVGPTLAC 1277
IiaeQFqRlrrGDRFwYEngrgkpsgFTpeVQLaeiRKtsLarliCdNtd
i+eQ+qRl+++DRF+YE + + FTp+ QL eiRK+sL+r+iCdN+
C46A5.4 1278 LIGEQMQRLKKCDRFYYETS-DSMVRFTPD-QLVEIRKASLSRIICDNSE 1325
vlt<-*
+ +
C46A5.4 1326 YAA 1328
vwc: domain 1 of 1, from 1365 to 1389: score 7.2, E = 1
*->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCd<-*
C+++++v + g+t ++ + C+ +CtC+
C46A5.4 1365 CLVDERVVNRGKTKRITP-------CI-TCTCT 1389