Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47A4.3
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Query: C47A4.3 CE19739 Ser\/Thr protein phosphatase status:Partially_confirmed TR:Q9U3L7 protein_id:CAB62794.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Metallophos Calcineurin-like phosphoesterase 141.4 1.6e-38 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Metallophos 1/1 54 252 .. 1 124 [] 141.4 1.6e-38
Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 54 to 252: score 141.4, E = 1.6e-38
*->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
++i v+gD+Hg+f dll+l++ ++ ++ ++lflGD+vdrg+ s+e+
C47A4.3 54 APIKVCGDIHGQFPDLLRLFHRGgWpPTANYLFLGDYVDRGRFSIET 100
llllfalklkapgpvylvrGNHDfdsgnsvy...............welf
+ ll+a+k+k+p +++l+rGNH++ ++n+ y+++ + + + +++f
C47A4.3 101 IVLLLAYKVKFPCNFFLLRGNHECEFVNKTYgfyeecqkryqsvrmYAAF 150
leef.lllla.lvdgkillvHgglspd.......................
+++f++l+l +l+ kil++Hgglsp ++ + ++ +++ +++++
C47A4.3 151 QDVFnWLPLTgLIATKILCMHGGLSPLmtkeftldtlrkierptegkegl 200
...............................leellk.ngvdlvirGHtH
+ + ++ ++ ++ ++ ++ + + ++++++ l+ + ++dlv+r+H+
C47A4.3 201 vadllwadpisglsgfmnnqrgagcgfgrdsVLNLCSeFQLDLVCRAHQV 250
.p<-*
+
C47A4.3 251 vQ 252