Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47D12.7
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Query: C47D12.7 CE20569 locus:kel-1 ring canal protein like status:Confirmed TR:Q18670 protein_id:CAA93769.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Kelch Kelch motif 250.9 1.8e-71 6
BTB BTB/POZ domain 152.2 8.9e-42 1
Adenyl_transf Streptomycin adenylyltransferase 1.6 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Adenyl_transf 1/1 49 61 .. 1 13 [. 1.6 9.6
BTB 1/1 46 168 .. 1 137 [] 152.2 8.9e-42
Kelch 1/6 332 364 .. 13 45 .] 18.5 0.0012
Kelch 2/6 366 411 .. 1 45 [] 55.9 2.3e-14
Kelch 3/6 413 458 .. 1 45 [] 53.1 1.5e-13
Kelch 4/6 460 507 .. 1 45 [] 59.6 1.9e-15
Kelch 5/6 509 552 .. 1 45 [] 29.0 1.1e-06
Kelch 6/6 554 602 .. 1 45 [] 34.7 2.7e-08
Alignments of top-scoring domains:
Adenyl_transf: domain 1 of 1, from 49 to 61: score 1.6, E = 9.6
*->MRtEkEmLDvvLe<-*
MR +E DvvLe
C47D12.7 49 MRCQQELCDVVLE 61
BTB: domain 1 of 1, from 46 to 168: score 152.2, E = 8.9e-42
*->lnelrengelcDVtlvvgdgegk......ne.vtSgkefkAHKavLa
ln +r++ elcDV+l ++ +g++++++ +++v+ ++++AH+++L+
C47D12.7 46 LNLMRCQQELCDVVLEAYPIQGTssedgmSDdVH--QHIHAHRVILS 90
AcSpYFkalFtgnfkestteeessviseielddvspedfealLefiYtge
A+S+YF+a+Ftg+ es+++ +i++++v+ e++ +l++++Ytg+
C47D12.7 91 ASSSYFRAMFTGG------LRESTQR-IIPIKEVDVEVLSQLIDYMYTGR 133
lsitqeqksPssckseenveelLelAadklqipslvdaCeefliknl<-*
i+ e+nv+ +L++A ++lq+ +++daC++f+++ l
C47D12.7 134 MRID-----------EQNVQTILATA-SLLQLTCVRDACARFMLELL 168
Kelch: domain 1 of 6, from 332 to 364: score 18.5, E = 0.0012
*->kiYviGGydgqslnsvevYDpetntWeklpsmp<-*
+i ++GG+ +++ +v+ +Dp+++ W+ ++s+p
C47D12.7 332 HIMIVGGQAPKAITNVDLFDPDSQLWSSCASLP 364
Kelch: domain 2 of 6, from 366 to 411: score 55.9, E = 2.3e-14
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
+R++ gv ++g++Y GG++g q+++sv+ YDp+t+tW+ + m+
C47D12.7 366 RRCRSGVSMCNGYVYTTGGFNGaQRVRSVDFYDPRTDTWRSANQMS 411
-*
C47D12.7 - -
Kelch: domain 3 of 6, from 413 to 458: score 53.1, E = 1.5e-13
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
+Rs +g++++ +Y++GG+dg++ l s+e++Dp t+ W +lpsm+
C47D12.7 413 RRSTHGITTCQQVLYAVGGFDGtTGLASAEYFDPHTGNWFPLPSMS 458
-*
C47D12.7 - -
Kelch: domain 4 of 6, from 460 to 507: score 59.6, E = 1.9e-15
*->pRsgagvvvlggkiYviGGydg...qslnsvevYDpetntWeklpsm
+Rs++gv++++ iY+iGG+dg ++q+ln+ve++D + ++W+++p m
C47D12.7 460 RRSSVGVAAFEEDIYAIGGFDGvskQCLNTVEIFDRRAHKWRPGPAM 506
p<-*
C47D12.7 507 L 507
Kelch: domain 5 of 6, from 509 to 552: score 29.0, E = 1.1e-06
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
Rsgagv+v++ ki ++GG+ g ++++s+e++ e +W +l++m
C47D12.7 509 VRSGAGVTVYDKKIIAVGGHKGaEIHRSAEILIGE--EWIELANMA 552
-*
C47D12.7 - -
Kelch: domain 6 of 6, from 554 to 602: score 34.7, E = 2.7e-08
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpe...tntWeklps
pR++ ++++l+g +Y++GG dg++ l+++e+ ++++++ +W+++
C47D12.7 554 PRRNTAATALNGLLYAVGGDDGsSNLSTIECIQLSdrsDAQWKIVDA 600
mp<-*
++
C47D12.7 601 PM 602