Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C47D12.7
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Query:  C47D12.7  CE20569  locus:kel-1 ring canal protein like status:Confirmed TR:Q18670 protein_id:CAA93769.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Kelch         Kelch motif                               250.9    1.8e-71   6
BTB           BTB/POZ domain                            152.2    8.9e-42   1
Adenyl_transf Streptomycin adenylyltransferase            1.6        9.6   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Adenyl_transf   1/1      49    61 ..     1    13 [.     1.6      9.6
BTB             1/1      46   168 ..     1   137 []   152.2  8.9e-42
Kelch           1/6     332   364 ..    13    45 .]    18.5   0.0012
Kelch           2/6     366   411 ..     1    45 []    55.9  2.3e-14
Kelch           3/6     413   458 ..     1    45 []    53.1  1.5e-13
Kelch           4/6     460   507 ..     1    45 []    59.6  1.9e-15
Kelch           5/6     509   552 ..     1    45 []    29.0  1.1e-06
Kelch           6/6     554   602 ..     1    45 []    34.7  2.7e-08

Alignments of top-scoring domains:
Adenyl_transf: domain 1 of 1, from 49 to 61: score 1.6, E = 9.6
                   *->MRtEkEmLDvvLe<-*
                      MR  +E  DvvLe
    C47D12.7    49    MRCQQELCDVVLE    61

BTB: domain 1 of 1, from 46 to 168: score 152.2, E = 8.9e-42
                   *->lnelrengelcDVtlvvgdgegk......ne.vtSgkefkAHKavLa
                      ln +r++ elcDV+l ++  +g++++++ +++v+  ++++AH+++L+
    C47D12.7    46    LNLMRCQQELCDVVLEAYPIQGTssedgmSDdVH--QHIHAHRVILS 90

                   AcSpYFkalFtgnfkestteeessviseielddvspedfealLefiYtge
                   A+S+YF+a+Ftg+        es+++ +i++++v+ e++ +l++++Ytg+
    C47D12.7    91 ASSSYFRAMFTGG------LRESTQR-IIPIKEVDVEVLSQLIDYMYTGR 133

                   lsitqeqksPssckseenveelLelAadklqipslvdaCeefliknl<-*
                     i+           e+nv+ +L++A ++lq+ +++daC++f+++ l
    C47D12.7   134 MRID-----------EQNVQTILATA-SLLQLTCVRDACARFMLELL    168

Kelch: domain 1 of 6, from 332 to 364: score 18.5, E = 0.0012
                   *->kiYviGGydgqslnsvevYDpetntWeklpsmp<-*
                      +i ++GG+ +++  +v+ +Dp+++ W+ ++s+p
    C47D12.7   332    HIMIVGGQAPKAITNVDLFDPDSQLWSSCASLP    364

Kelch: domain 2 of 6, from 366 to 411: score 55.9, E = 2.3e-14
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
                      +R++ gv  ++g++Y  GG++g q+++sv+ YDp+t+tW+  + m+
    C47D12.7   366    RRCRSGVSMCNGYVYTTGGFNGaQRVRSVDFYDPRTDTWRSANQMS  411

                   -*

    C47D12.7     -    -

Kelch: domain 3 of 6, from 413 to 458: score 53.1, E = 1.5e-13
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
                      +Rs +g++++   +Y++GG+dg++ l s+e++Dp t+ W +lpsm+
    C47D12.7   413    RRSTHGITTCQQVLYAVGGFDGtTGLASAEYFDPHTGNWFPLPSMS  458

                   -*

    C47D12.7     -    -

Kelch: domain 4 of 6, from 460 to 507: score 59.6, E = 1.9e-15
                   *->pRsgagvvvlggkiYviGGydg...qslnsvevYDpetntWeklpsm
                      +Rs++gv++++  iY+iGG+dg ++q+ln+ve++D + ++W+++p m
    C47D12.7   460    RRSSVGVAAFEEDIYAIGGFDGvskQCLNTVEIFDRRAHKWRPGPAM 506

                   p<-*

    C47D12.7   507 L    507

Kelch: domain 5 of 6, from 509 to 552: score 29.0, E = 1.1e-06
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
                       Rsgagv+v++ ki ++GG+ g ++++s+e++  e  +W +l++m
    C47D12.7   509    VRSGAGVTVYDKKIIAVGGHKGaEIHRSAEILIGE--EWIELANMA  552

                   -*

    C47D12.7     -    -

Kelch: domain 6 of 6, from 554 to 602: score 34.7, E = 2.7e-08
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpe...tntWeklps
                      pR++ ++++l+g +Y++GG dg++ l+++e+  ++++++ +W+++
    C47D12.7   554    PRRNTAATALNGLLYAVGGDDGsSNLSTIECIQLSdrsDAQWKIVDA 600

                   mp<-*
                   ++
    C47D12.7   601 PM    602



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