Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47D12.6
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Query: C47D12.6 CE05434 locus:trs-1 threonyl-tRNA synthetase status:Partially_confirmed SW:P52709 protein_id:CAA93762.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tRNA-synt_2b tRNA synthetase class II core domain ( 193.9 1.3e-56 1
HGTP_anticodon Anticodon binding domain 106.8 3.4e-30 1
TGS TGS domain 84.9 3.2e-22 1
Autophagy_N Autophagocytosis associated protein, N 6.7 1.4 1
DUF427 Domain of unknown function (DUF427) 4.1 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TGS 1/1 78 142 .. 1 77 [] 84.9 3.2e-22
tRNA-synt_2b 1/1 340 494 .. 1 229 [] 193.9 1.3e-56
DUF427 1/1 537 550 .. 91 105 .] 4.1 7.8
Autophagy_N 1/1 587 606 .. 1 20 [. 6.7 1.4
HGTP_anticodon 1/1 613 710 .. 1 108 [] 106.8 3.4e-30
Alignments of top-scoring domains:
TGS: domain 1 of 1, from 78 to 142: score 84.9, E = 3.2e-22
*->fldlirvytKPdGkvpdfePlilpkGsTTpeDfAyaIHtdlgkkfig
++++i +++ PdGk+ + + ++TTp ++A++I+++l++++++
C47D12.6 78 ESEPIQITL-PDGKIHE-----GKTWRTTPFEIAERISKGLAEAAVI 118
AkVnGkSvKhpqrVgLdhvLedgDvVeIvt<-*
AkVnG ++Ld++ e ++++e+++
C47D12.6 119 AKVNG------AVWDLDRPFEGNAKLELLK 142
tRNA-synt_2b: domain 1 of 1, from 340 to 494: score 193.9, E = 1.3e-56
*->GfydllPlGarlrralenfirevfelikfeiGieyGyqevdtPilep
G+ +++P+Ga ++++l++fir+++++ +G++ev+tP +++
C47D12.6 340 GSAFWYPKGAHIYNKLVDFIRKQYRR--------RGFTEVITPNMYN 378
eeelwkgsGhldkfvenMfkckkcgKelyrfddegeeqkekLkkgdeeae
+ lw++sGh+++++e+Mfk ++++e
C47D12.6 379 K-KLWETSGHWQHYSEDMFK--------IEVEKE---------------- 403
lpeleieynirPecGLtPrFNLMFTIGPgggreelyLrPtaevgiarlfk
e+ L+P++++g++++f
C47D12.6 404 ---------------------------------EFGLKPMNCPGHCLMFG 420
neilsyreekdLPlklyqigpcFRyEaspaGkdrrGlgRvReFtqvedeh
+ + y+ +LP++++ +g +R+E s+ ++ Gl+RvR F+ ++d+h
C47D12.6 421 HMPHTYN---ELPFRFADFGVLHRNEMSG---ALTGLTRVRRFQ-QDDAH 463
ifhpdeeqaseeadeellllaeeilqaLGlpy<-*
if+ ++q+see+ + l++l + + + +G+++
C47D12.6 464 IFCR-QDQISEEIKQCLDFLEYAYEKVFGFTF 494
DUF427: domain 1 of 1, from 537 to 550: score 4.1, E = 7.8
*->vAFYpekVDkiyvdg<-*
+AFY +k D i++++
C47D12.6 537 GAFYGPKID-ITIQD 550
Autophagy_N: domain 1 of 1, from 587 to 606: score 6.7, E = 1.4
*->tlksaalnvrEylTPvlkeS<-*
+++ a l+ +E++T +l+eS
C47D12.6 587 MIHRAVLGSVERMTAILTES 606
HGTP_anticodon: domain 1 of 1, from 613 to 710: score 106.8, E = 3.4e-30
*->pwlAPiqVvviPlgekeelldyAeklaeeLraaGirvelDykgkddr
wl+P+q+ +i+++e ++dyA ++ ++ +aG++ e+ +
C47D12.6 613 FWLSPRQCKIITVHE--SVRDYANDVKKQIFEAGFEIEYE-----EN 652
nerklGkkfrdAdliGiPfavvvGekElengldgtVtvrdRdtgeqetvs
+ +++k++r+A+l + +f++v+G+kE en gtV+vr+Rd+ +++v+
C47D12.6 653 CGDTMNKQVRKAQLAQFNFILVIGAKEKEN---GTVNVRTRDNAVRGEVA 699
leelveklkel<-*
l++l++k+++
C47D12.6 700 LDKLISKFRRF 710