Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47E12.3
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Query: C47E12.3 CE05447 alpha-mannosidase status:Partially_confirmed TR:Q18679 protein_id:CAA93106.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_47 Glycosyl hydrolase family 47 841.3 3.4e-249 1
DUF567 Protein of unknown function (DUF567) 4.9 3.5 1
CheD CheD 4.6 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CheD 1/1 72 92 .. 110 130 .] 4.6 9.3
Glyco_hydro_47 1/1 1 451 [. 1 515 [] 841.3 3.4e-249
DUF567 1/1 510 525 .. 179 194 .] 4.9 3.5
Alignments of top-scoring domains:
CheD: domain 1 of 1, from 72 to 92: score 4.6, E = 9.3
*->vlvrkvdggkadavkqeekvi<-*
+ +++v ++k+ +v++ e +i
C47E12.3 72 LVIKTVSFEKNTTVQVFESTI 92
Glyco_hydro_47: domain 1 of 1, from 1 to 451: score 841.3, E = 3.4e-249
*->MFqHAWdgYkkYAwghDELkPiscrgrkrd..dPsnlhssdifGesn
MFq++Wd+Y+++A+++DEL+Pi+crgr++d+++P+n++++d++G +
C47E12.3 1 MFQFGWDNYMEHAFPADELDPIHCRGRGHDhdNPDNINVNDVLG--D 45
lgaTivDaLDTLyiMGledEfreAvdwveetlsfdnplidstVsVFEtTI
+++ ++D+LD L+++G++dEf++Av++v++t+sf+ +++tV+VFE TI
C47E12.3 46 YSLGLIDTLDSLVVFGDADEFKRAVNLVIKTVSFE---KNTTVQVFESTI 92
RvlGGLLSAYaLtgdpkk.lgdvegsdydkmLLkKAvdlAdrLLpAF.nT
Rv+GGLL+A++++ d+++++g++++sdy+++LL++A+dlA rLLpAF+ T
C47E12.3 93 RVMGGLLAAHMIAADKTNrFGPFYMSDYGGELLTLAHDLAGRLLPAFdGT 142
ptGIPysrvNlksgvaknytwasggssilAefGTLlLEFtyLSrLTGdpt
tGIPy+r+Nl++g+ +++t+ s++++++G+LlLEF+ LS+L+Gd+t
C47E12.3 143 ATGIPYTRINLQKGILPGTTN----STCTSGAGSLLLEFGVLSKLLGDDT 188
YekkarkardaLwklrcekpeGLypnyinpqtGqqwtqshislGAggDGS
Ye++ar+++++Lw+lr ++++GL++n i++qtG +w ++ +lGAg+D S
C47E12.3 189 YERLARRVNEKLWNLR-NEVTGLHGNLIDIQTG-EWLGHLAGLGAGID-S 235
fYEYLlKayiltgktdleakdmyneAieAikkhlrrqskpsgLtyfaelk
fYEY+lK+yil+g++++ +dmyne++++i +++rr+++ + +++l+
C47E12.3 236 FYEYMLKSYILFGNQRD--LDMYNESFARITTYMRRGRS----R-CSSLE 278
ngrfkilehkmdHLaCFdGGlfalgadsldaffpgEvlqvlegdkeiait
++ +++++++ +dG+++++++dsl+a+f g +vl+g++++a +
C47E12.3 279 GDI-----PIYVNVDSRDGSTSNTWIDSLQASFAG--VLVLAGEVDEAVC 321
cHemYdrtwtklGpepfrFneaveksdqlslyeaaavkvlellafypLRP
+H+ Y+++w+k+G +p+rFn++++ a++v+ fypLRP
C47E12.3 322 HHALYYAIWKKYGVLPERFNWQLQ-----------APDVS----FYPLRP 356
EviEStyyLYRNIaTkdpkmPTTNEYrewgweavqalekycRvkcGggls
E++ESty+LY aTk+p+ Y+++g e++++le +RvkcG
C47E12.3 357 EFVESTYLLYT--ATKNPF------YQHVGLEILDSLETITRVKCG---- 394
sRyaglrnVytksigskeDrMESFfLAETlKYLYLlFdddnalqvellpl
+a++++V+++s+ eDrMESFfL+ETlKYLYLlFd d+ ++++ ++
C47E12.3 395 --FATVHDVIDGSL---EDRMESFFLSETLKYLYLLFDVDH--PINKEQQ 437
dkctdevngnwVFNTEAHPlpi<-*
++ + F+TE+H++pi
C47E12.3 438 ES--------VLFSTEGHIFPI 451
DUF567: domain 1 of 1, from 510 to 525: score 4.9, E = 3.5
*->VkpevDyafiiaLvvv<-*
V + D++f ++Lv++
C47E12.3 510 VLHDCDGRFLMGLVLI 525