Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47G2.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C47G2.1 CE02165 locus:cut-1 cuticulin status:Partially_confirmed SW:Q03755 protein_id:CAA88934.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zona_pellucida Zona pellucida-like domain 128.8 9.9e-35 1
DUF453 Protein of unknown function (DUF453) 2.5 2.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF453 1/1 48 55 .. 383 390 .] 2.5 2.8
zona_pellucida 1/1 32 273 .. 1 296 [] 128.8 9.9e-35
Alignments of top-scoring domains:
DUF453: domain 1 of 1, from 48 to 55: score 2.5, E = 2.8
*->MeGwVrvp<-*
+eG+V+v+
C47G2.1 48 FEGHVYVK 55
zona_pellucida: domain 1 of 1, from 32 to 273: score 128.8, E = 9.9e-35
*->qCtedGqmvVvvskdllgfpglilssllllgldpsCqpvpsgsteaf
+C+++ +++V ++ + f g +++++l+ C+ + ++ +
C47G2.1 32 ECGPN-SITVNFNTRNP-FEGHVYVKGLY--DQAGCR--SDEGGRQV 72
viFqfplndsCGtt...qvtgdglvYeNtlivSsyevisgppggsItrds
+ +++p+++ C+t ++++ +++g++ ++t+ vis++p ++++
C47G2.1 73 AGIELPFDS-CNTArtrSLNPKGVFVSTTV------VISFHPQ--FVTKV 113
dfrlhvsCswdYprtskvsllavdvtwvpfpptpssepgpltGkftlsLr
d ++ ++C+ Y++++k+++ ++v+ ++++ +++ p+p+
C47G2.1 114 DRAYRIQCF--YMESDKTVSTQIEVSDLTTAFQTQVVPMPV--------- 152
LyngctKGcEmddsysspytsgdypvtkkLGdplyvevsvlqrsdpplgl
+ + ++ + +sg+ +++++G+ +y+ ++++ ++++ +
C47G2.1 153 ----------CKYEILDGGPSGQPIQFATIGQQVYHKWTCDSETTDTFCA 192
fldsCvATpteDpdpnssprydiidngCcldvddkyltsfspvgsssfps
+++sC + +++ + + +i+ + +c d ++l+++++ + +
C47G2.1 193 VVHSCTVDDGN------GDTVQILNEEGCA-LDKFLLNNLEY-----PTD 230
hylrFqfkaFkFvdsssslspLrslVYihCsvkvCdpscpdsdlcnkaCs
++ + ++ k++d+ s+++ +C+++++ + +p+s+ +++Cs
C47G2.1 231 LMAGQEAHVYKYADR--------SQLFYQCQISITIK-DPGSECARPTCS 271
fn<-*
+
C47G2.1 272 EP 273