Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C48A7.2
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Query:  C48A7.2  CE20573   phosphate permease status:Confirmed TR:Q18697 protein_id:AAB03157.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
PHO4         Phosphate transporter family               612.4   1.5e-193   1
sugar_tr     Sugar (and other) transporter                7.1       0.26   1
Ca_channel_B Dihydropyridine sensitive L-type calcium     0.2        9.6   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ca_channel_B   1/1      57    76 ..    12    31 ..     0.2      9.6
sugar_tr       1/1     373   418 ..   322   360 ..     7.1     0.26
PHO4           1/1      23   503 ..     1   433 []   612.4 1.5e-193

Alignments of top-scoring domains:
Ca_channel_B: domain 1 of 1, from 57 to 76: score 0.2, E = 9.6
                   *->GPsLKGYEvtDmmqKAlFDf<-*
                      G  L G  vtD m K + Df
     C48A7.2    57    GACLLGHQVTDTMRKGVIDF    76

sugar_tr: domain 1 of 1, from 373 to 418: score 7.1, E = 0.26
                   *->vvNfvfTfvaLiflvDrfGRR........pllllGaagmaicflilg
                      v N+++++v+ ++l+   G+++ + +++  lll G++gm++++++lg
     C48A7.2   373    VSNAIAPLVS-LYLIANDGMKsadmetpwYLLLYGSFGMCLGLWVLG 418

                   <-*

     C48A7.2     -     -

PHO4: domain 1 of 1, from 23 to 503: score 612.4, E = 1.5e-193
                   *->iGANDvANsfGTsVGSGaLTlrqAviLAaifEflGAvllGgkVaeTI
                      iGAND+ANsfGTsVGS++LTl qA++LA+ifE+lGA llG  V++T+
     C48A7.2    23    IGANDTANSFGTSVGSKVLTLHQAYVLASIFETLGACLLGHQVTDTM 69

                   rkgivdp............sgysntpallilgmvAaLlgAavWlmliAty
                   rkg++d+++ +++++++  ++ ++  ++++lg++A L g++vW  l+At
     C48A7.2    70 RKGVIDFsefgkhengtvlMSENDLGHTIMLGQIAILTGCGVWM-LLATA 118

                   lGlPvSttHsIVGaviGfGlAaggfGldgvqWsklgkIvlSWviSPilag
                   ++lPvSttHsIVGa+iGf+l+a   G ++++W k+++I+ SW+iSP+l+g
     C48A7.2   119 FKLPVSTTHSIVGATIGFALVAQ--GSRVIVWEKIYRIFFSWIISPLLSG 166

                   lfAfilyslirrsrlilrkenerpvknalrllPivyaatilinslviiyk
                   +++ ++y+ +++  l+lr+e+  p+ +++r+lP++y++++++n++ i yk
     C48A7.2   167 IVSVFIYLSLDH--LVLRREQ--PLHSGIRVLPALYFICFAFNVFAIVYK 212

                   Gskdlqldnlpia..lavlislgialiaaffvlfvvkprmrrkiaqk...
                   G   l++d+l++++ l++  ++g  l +a++++f++ p+++  i +k+
     C48A7.2   213 GPSFLYFDRLSLTqcLIISGVFG--LAVALIFAFFLAPYLKDHILSKell 260

                   ........tkhsallskaaskelkeva.......................
                   + +++++++ h++ ++ + + +  e+++++++  ++++++++  ++++
     C48A7.2   261 eitgkqrhSHHGHNEKSSSKRKEFEMEegngkylesdnngqplldqptiv 310

                   ................................asevagkilkgflwllpe
                    ++ +++++++++  +++ +++++  +  ++ ++
     C48A7.2   311 vstcpsngestssfakntirpssslasffrscKP---------------- 344

                   ryrsddrsvekiFsylQiitAcfmaFAHGaNDVANAiGPlaAil.vyktg
                       +d+ + ++Fs lQ++tAcf +FAHG+NDV+NAi+Pl+ ++ + ++g
     C48A7.2   345 ----EDPQASRLFSLLQVMTACFGGFAHGGNDVSNAIAPLVSLYlIANDG 390

                   gvsqkgaasdvPvwvllyGglalaiGlwtgGyRVIkTvGkkITeltPsrG
                      +k+a +++P+++llyG++++++Glw++G+RVI+TvG ++T++tP++G
     C48A7.2   391 ---MKSADMETPWYLLLYGSFGMCLGLWVLGHRVIYTVGENLTKITPASG 437

                   FsaelgaAitVllAsklGlPVSTTHclVGaVvGVGlarggvkaVnwrvvr
                   F++e+gaA+tVl+AsklGlP+S+T+c VG+Vv+VGl+ + +  V+w+v+r
     C48A7.2   438 FAVEFGAAVTVLIASKLGLPISSTQCKVGSVVAVGLVQS-RHQVHWGVFR 486

                   nIivsWivTlPvaglis<-*
                   nI +sWivTlPvagl+s
     C48A7.2   487 NISLSWIVTLPVAGLLS    503



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