Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C48A7.2
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Query: C48A7.2 CE20573 phosphate permease status:Confirmed TR:Q18697 protein_id:AAB03157.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PHO4 Phosphate transporter family 612.4 1.5e-193 1
sugar_tr Sugar (and other) transporter 7.1 0.26 1
Ca_channel_B Dihydropyridine sensitive L-type calcium 0.2 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ca_channel_B 1/1 57 76 .. 12 31 .. 0.2 9.6
sugar_tr 1/1 373 418 .. 322 360 .. 7.1 0.26
PHO4 1/1 23 503 .. 1 433 [] 612.4 1.5e-193
Alignments of top-scoring domains:
Ca_channel_B: domain 1 of 1, from 57 to 76: score 0.2, E = 9.6
*->GPsLKGYEvtDmmqKAlFDf<-*
G L G vtD m K + Df
C48A7.2 57 GACLLGHQVTDTMRKGVIDF 76
sugar_tr: domain 1 of 1, from 373 to 418: score 7.1, E = 0.26
*->vvNfvfTfvaLiflvDrfGRR........pllllGaagmaicflilg
v N+++++v+ ++l+ G+++ + +++ lll G++gm++++++lg
C48A7.2 373 VSNAIAPLVS-LYLIANDGMKsadmetpwYLLLYGSFGMCLGLWVLG 418
<-*
C48A7.2 - -
PHO4: domain 1 of 1, from 23 to 503: score 612.4, E = 1.5e-193
*->iGANDvANsfGTsVGSGaLTlrqAviLAaifEflGAvllGgkVaeTI
iGAND+ANsfGTsVGS++LTl qA++LA+ifE+lGA llG V++T+
C48A7.2 23 IGANDTANSFGTSVGSKVLTLHQAYVLASIFETLGACLLGHQVTDTM 69
rkgivdp............sgysntpallilgmvAaLlgAavWlmliAty
rkg++d+++ +++++++ ++ ++ ++++lg++A L g++vW l+At
C48A7.2 70 RKGVIDFsefgkhengtvlMSENDLGHTIMLGQIAILTGCGVWM-LLATA 118
lGlPvSttHsIVGaviGfGlAaggfGldgvqWsklgkIvlSWviSPilag
++lPvSttHsIVGa+iGf+l+a G ++++W k+++I+ SW+iSP+l+g
C48A7.2 119 FKLPVSTTHSIVGATIGFALVAQ--GSRVIVWEKIYRIFFSWIISPLLSG 166
lfAfilyslirrsrlilrkenerpvknalrllPivyaatilinslviiyk
+++ ++y+ +++ l+lr+e+ p+ +++r+lP++y++++++n++ i yk
C48A7.2 167 IVSVFIYLSLDH--LVLRREQ--PLHSGIRVLPALYFICFAFNVFAIVYK 212
Gskdlqldnlpia..lavlislgialiaaffvlfvvkprmrrkiaqk...
G l++d+l++++ l++ ++g l +a++++f++ p+++ i +k+
C48A7.2 213 GPSFLYFDRLSLTqcLIISGVFG--LAVALIFAFFLAPYLKDHILSKell 260
........tkhsallskaaskelkeva.......................
+ +++++++ h++ ++ + + + e+++++++ ++++++++ ++++
C48A7.2 261 eitgkqrhSHHGHNEKSSSKRKEFEMEegngkylesdnngqplldqptiv 310
................................asevagkilkgflwllpe
++ +++++++++ +++ +++++ + ++ ++
C48A7.2 311 vstcpsngestssfakntirpssslasffrscKP---------------- 344
ryrsddrsvekiFsylQiitAcfmaFAHGaNDVANAiGPlaAil.vyktg
+d+ + ++Fs lQ++tAcf +FAHG+NDV+NAi+Pl+ ++ + ++g
C48A7.2 345 ----EDPQASRLFSLLQVMTACFGGFAHGGNDVSNAIAPLVSLYlIANDG 390
gvsqkgaasdvPvwvllyGglalaiGlwtgGyRVIkTvGkkITeltPsrG
+k+a +++P+++llyG++++++Glw++G+RVI+TvG ++T++tP++G
C48A7.2 391 ---MKSADMETPWYLLLYGSFGMCLGLWVLGHRVIYTVGENLTKITPASG 437
FsaelgaAitVllAsklGlPVSTTHclVGaVvGVGlarggvkaVnwrvvr
F++e+gaA+tVl+AsklGlP+S+T+c VG+Vv+VGl+ + + V+w+v+r
C48A7.2 438 FAVEFGAAVTVLIASKLGLPISSTQCKVGSVVAVGLVQS-RHQVHWGVFR 486
nIivsWivTlPvaglis<-*
nI +sWivTlPvagl+s
C48A7.2 487 NISLSWIVTLPVAGLLS 503