Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C49G7.3
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Query: C49G7.3 CE08861 status:Confirmed TR:O16226 protein_id:AAK18898.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 93.5 1.4e-26 4
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ShTK 1/4 99 109 .. 34 44 .] 2.5 31
ShTK 2/4 115 155 .. 1 44 [] 35.5 3.9e-09
ShTK 3/4 158 194 .. 1 44 [] 43.3 1.8e-11
ShTK 4/4 210 248 .] 5 43 .. 33.3 1.8e-08
Alignments of top-scoring domains:
ShTK: domain 1 of 4, from 99 to 109: score 2.5, E = 31
*->enCpkTCGfCs<-*
+nC++TCG+C
C49G7.3 99 KNCARTCGLCC 109
ShTK: domain 2 of 4, from 115 to 155: score 35.5, E = 3.9e-09
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C ++++p+ C+++++ + C+++ ++++++++Cp +CGfC+
C49G7.3 115 DCPNVQFPRLTCSTITNEQ--CRSSV-WRTIIATDCPSACGFCN 155
ShTK: domain 3 of 4, from 158 to 194: score 43.3, E = 1.8e-11
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+Cv D dCa+ s+ C + +q+f++++C+kTC +Cs
C49G7.3 158 GCV---DGVMDCANDLSI---CGAVG-MQEFVNQYCQKTCQRCS 194
ShTK: domain 4 of 4, from 210 to 248: score 33.3, E = 1.8e-08
*->yv.DpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
y+ D+++ Caaw+ +G+ C+n +Y+ ++++++C+ TC +C
C49G7.3 210 YIaDSSTACAAWKLNGF-CTNTFYTAAQRRSYCATTCALC 248