Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C49G7.3
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Query:  C49G7.3  CE08861    status:Confirmed TR:O16226 protein_id:AAK18898.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ShTK     ShTK domain                                     93.5    1.4e-26   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ShTK       1/4      99   109 ..    34    44 .]     2.5       31
ShTK       2/4     115   155 ..     1    44 []    35.5  3.9e-09
ShTK       3/4     158   194 ..     1    44 []    43.3  1.8e-11
ShTK       4/4     210   248 .]     5    43 ..    33.3  1.8e-08

Alignments of top-scoring domains:
ShTK: domain 1 of 4, from 99 to 109: score 2.5, E = 31
                   *->enCpkTCGfCs<-*
                      +nC++TCG+C
     C49G7.3    99    KNCARTCGLCC    109

ShTK: domain 2 of 4, from 115 to 155: score 35.5, E = 3.9e-09
                   *->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
                      +C ++++p+  C+++++ +  C+++  ++++++++Cp +CGfC+
     C49G7.3   115    DCPNVQFPRLTCSTITNEQ--CRSSV-WRTIIATDCPSACGFCN    155

ShTK: domain 3 of 4, from 158 to 194: score 43.3, E = 1.8e-11
                   *->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
                      +Cv   D   dCa+  s+   C   + +q+f++++C+kTC +Cs
     C49G7.3   158    GCV---DGVMDCANDLSI---CGAVG-MQEFVNQYCQKTCQRCS    194

ShTK: domain 4 of 4, from 210 to 248: score 33.3, E = 1.8e-08
                   *->yv.DpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
                      y+ D+++ Caaw+ +G+ C+n +Y+ ++++++C+ TC +C
     C49G7.3   210    YIaDSSTACAAWKLNGF-CTNTFYTAAQRRSYCATTCALC    248



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