Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C49H3.10
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Query: C49H3.10 CE29726 status:Partially_confirmed TR:Q9GYQ7 protein_id:AAF99897.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Exportin-t Exportin-t 633.0 2.3e-187 1
ZU5 ZU5 domain 4.1 9.1 1
Glyco_transf_10 Glycosyltransferase family 10 (fucosy 4.1 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_transf_10 1/1 496 526 .. 465 502 .] 4.1 3
ZU5 1/1 547 586 .. 41 87 .. 4.1 9.1
Exportin-t 1/1 590 937 .. 1 440 [. 633.0 2.3e-187
Alignments of top-scoring domains:
Glyco_transf_10: domain 1 of 1, from 496 to 526: score 4.1, E = 3
*->VlEydegfCrvCrllqkapdllelSryktipnlakWFq<-*
Vl y e+ Cr+ rll p ++++ip +a++F
C49H3.10 496 VL-YFELACRYERLLVLQP------QPVVIPHIAAAFL 526
ZU5: domain 1 of 1, from 547 to 586: score 4.1, E = 9.1
*->cYlvvhkklstpPPlDkeegetLlSPvvecGPCDVSmSAhGalllrP
c++v+++k + P+ +e t l P+++++P A ++ll+P
C49H3.10 547 CRFVKSHKTVLGPLV--SEVITRLAPLLAVSP-----QADTNQLLSP 586
<-*
C49H3.10 - -
Exportin-t: domain 1 of 1, from 590 to 937: score 633.0, E = 2.3e-187
*->lYIFEaiGvLIvlgdltaEkksayvsePiDYDLltpLlekfeagLee
+YIFEa+++LIv+gdlt+E+ks+yv+e L+++L++kfe+gL+e
C49H3.10 590 GYIFEATATLIVFGDLTSEMKSQYVGE-----LASTLAMKFENGLVE 631
lltAsaeKAdeeiieadcqlmSNaiGilArgskafenketakanmvvnKK
l+tA+a+KAdee+i+a++q+mSN+iG+++r+skaf+n++++ka
C49H3.10 632 LNTARARKADEETIQAILQFMSNIIGYSSRMSKAFNNAQSMKA------- 674
LincscievyleilevlLrtlSefnkvedLRsavRfflhRlivvLenevL
c+ci++yl++++++L+tlS++n ++L++++R+f+hRl+v++ene++
C49H3.10 675 ---CNCIDIYLRLIKLYLETLSPQN--AFLLESTRQFAHRLVVSMENELM 719
PyipkliekLALkstdlksWemvdfLvflsQliakFktDkamleilnqll
Py++++++kLAL+stdl+ +m+++L+f++Q++ak+k kaml+++++l+
C49H3.10 720 PYMNGIFDKLALVSTDLD--SMHHLLIFCHQTVAKYK--KAMLTSGVDLG 765
pvLlvrifsvLerdaeeqdqdaavekPiDtAvtAtsvnKnivvtDSyRdk
+vL+++++++L+ eq++++++++ DS+R++
C49H3.10 766 NVLAIAARASLQ----EQENNIPAKD------------------DSQRAL 793
lllrkaYvsfLytvlnsgvtsvLateeneavldvvlnslvrlAleyldpa
l++++a+v++Lytv++s++t++L+t++++ ld+vl+s++rlAl+++++a
C49H3.10 794 LYVQRAFVQLLYTVIASDCTPALNTTPGL--LDHVLESAARLALSSDQTA 841
smmqlslnalcskivslwggkdGrvDDinKDPnLKiDGfenFvlshivpn
++++ls++a++s+i+++w+++++rv ++e+++lshi+p
C49H3.10 842 QKVALSCLAKISLITPSWSARTLRV------------ALEIPSLSHITP- 878
iCFeiPlnpsYKFNlkDAnsllvlgElaalLkvlheksgdPttnEnefvk
s DA+s+lv++E++a+L++lh++++d +f++
C49H3.10 879 ---------S------DAGSTLVVHEVCATLTSLHQSDPD------GFTR 907
yLvqvYlPsvqvPqelaeqylqaLtnldGFnKtgksFkksirv<-*
+L+++ vP+++++q+l+aLtnl+ gk+++k +v
C49H3.10 908 ALREL------VPNGFSDQLLSALTNLK-----GKNLDK--QV 937