Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C50B8.2
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Query:  C50B8.2  CE08882  locus:bir-2 Inhibitor of Apoptosis domain. status:Confirmed TR:Q18727 protein_id:CAB01130.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
BIR      Inhibitor of Apoptosis domain                  197.0    2.9e-55   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BIR        1/2      27    98 ..     1    75 []   101.7  6.8e-27
BIR        2/2     170   241 ..     1    75 []   102.4  4.3e-27

Alignments of top-scoring domains:
BIR: domain 1 of 2, from 27 to 98: score 101.7, E = 6.8e-27
                   *->RlkTFqnkkWPisnlqssh.ctpeqLAkAGFyytgvgDevDsArCff
                      R+++F+   + ++++ + + ct+e+LA+AGFy t   + ++sA+C+f
     C50B8.2    27    RFASFKG--FVYDKRIN-IaCTSEKLARAGFYSTASPEFPASAKCPF 70

                   CgveLknWepgDdPweeHkrwsPnCpFvl<-*
                   C++e+  +e++DdPwe+Hk  sP+C+Fv+
     C50B8.2    71 CMLEIN-FEQCDDPWEKHKSGSPHCEFVM    98

BIR: domain 2 of 2, from 170 to 241: score 102.4, E = 4.3e-27
                   *->RlkTFqnkkWPisnlqssh.ctpeqLAkAG.FyytgvgDevDsArCf
                      Rl+TFqn  + ++++++ ++ct+ +LAkAG F   +++D++ sA+C+
     C50B8.2   170    RLATFQN--FIFDKKRN-VkCTSKKLAKAGwFSIANKKDKT-SAKCP 212

                   fCgveLknWepgDdPweeHkrwsPnCpFvl<-*
                   fC veL+ ++++DdPweeH+++s +C F++
     C50B8.2   213 FCLVELD-FDESDDPWEEHQKFSASCDFIK    241



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