Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C50B8.2
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Query: C50B8.2 CE08882 locus:bir-2 Inhibitor of Apoptosis domain. status:Confirmed TR:Q18727 protein_id:CAB01130.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BIR Inhibitor of Apoptosis domain 197.0 2.9e-55 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BIR 1/2 27 98 .. 1 75 [] 101.7 6.8e-27
BIR 2/2 170 241 .. 1 75 [] 102.4 4.3e-27
Alignments of top-scoring domains:
BIR: domain 1 of 2, from 27 to 98: score 101.7, E = 6.8e-27
*->RlkTFqnkkWPisnlqssh.ctpeqLAkAGFyytgvgDevDsArCff
R+++F+ + ++++ + + ct+e+LA+AGFy t + ++sA+C+f
C50B8.2 27 RFASFKG--FVYDKRIN-IaCTSEKLARAGFYSTASPEFPASAKCPF 70
CgveLknWepgDdPweeHkrwsPnCpFvl<-*
C++e+ +e++DdPwe+Hk sP+C+Fv+
C50B8.2 71 CMLEIN-FEQCDDPWEKHKSGSPHCEFVM 98
BIR: domain 2 of 2, from 170 to 241: score 102.4, E = 4.3e-27
*->RlkTFqnkkWPisnlqssh.ctpeqLAkAG.FyytgvgDevDsArCf
Rl+TFqn + ++++++ ++ct+ +LAkAG F +++D++ sA+C+
C50B8.2 170 RLATFQN--FIFDKKRN-VkCTSKKLAKAGwFSIANKKDKT-SAKCP 212
fCgveLknWepgDdPweeHkrwsPnCpFvl<-*
fC veL+ ++++DdPweeH+++s +C F++
C50B8.2 213 FCLVELD-FDESDDPWEEHQKFSASCDFIK 241