Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C50F2.5
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Query: C50F2.5 CE08911 status:Partially_confirmed TR:P91179 protein_id:AAB37798.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 131.2 3.3e-36 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Y_phosphatase 1/1 72 332 .. 1 274 [] 131.2 3.3e-36
Alignments of top-scoring domains:
Y_phosphatase: domain 1 of 1, from 72 to 332: score 131.2, E = 3.3e-36
*->NkeKNRykdilpyDhtRVkLkegsDYINAnyidgpqsrtlvvykkpk
N++ N + i+ D+ RV + + y+++ ++
C50F2.5 72 NLPVNVRLPIPIRDNRRVLCGSDEEFFPGQYVRM----------EGA 108
ayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgre.eeKtCaqYW
+yI+ Q+P +++ + Wr + ++++ V+L+ ++ ++ +++ K C+ Y+
C50F2.5 109 EYIIVQAPTKKSSKLIWRVILKDHIRILVCLCHDEQMSGSdDGK-CYTYF 157
Pee.ggeeggsltyGditVtlvseekk......ddddytvRtleltn.gd
P+e +++++ +l+ G +++ ++ e ++ + ++++ + t ++ ++ ++ d
C50F2.5 158 PTElEQKMEAELMKGTLSIVCKAREGLsmgatkYELELTDSEVVIDKnSD 207
es.k.neakqeklkgetrtVthyhytgWPDhgvPesg.....pkslldfl
+++++n +++++ ++h+ +W + P sg+ ++++ + f
C50F2.5 208 DPnAsN--------YKSHRLIVFHMNTWSGQ-KPTSGnaleqAQNVALFF 248
rkvrksqsqenes.geaspdsgprSsctgPivVHCSAGiGRTGtfiaidi
r+v+k+ + ++++e+ P++ ++ +Gi R+ t ++ +
C50F2.5 249 REVKKFEMDILRKsMENFVP---------PVMLQSFDGINRASTGWVALM 289
llqqleaegvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
ll+ +e+ +++ d++ ++k + + R+g++ t+ Q++F+ + l+
C50F2.5 290 LLRDVEKRECF-DVPSLIKAIMKFRNGSISTYYQFCFCMAVCLN 332