Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C50F4.10
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Query: C50F4.10 CE05474 serine\/threonine kinase status:Partially_confirmed TR:Q18738 protein_id:CAA94735.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 27.0 2.2e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 109 260 .. 75 249 .. 27.0 2.2e-06
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 109 to 260: score 27.0, E = 2.2e-06
*->ylvmEymegGdLfdylrrng.gplsekeakkialQilrGleYLHsng
y+vm + + L dy++ +g++s + a+++ Q+ ++le LH++g
C50F4.10 109 YIVMHMIGR-ALVDYMKTSMsGAISVNCALSVGIQLIEALEDLHNCG 154
ivHRDLKpeNILlden....dgtvKiaDFGLArlle.......ssskltt
++HRDLKp+NI + ++++++ g++ + FG++r + +++++ + +
C50F4.10 155 FIHRDLKPSNICFGRKdrneLGKLYLLSFGISRRYLdsknqmrKPRDNVE 204
fvGTpwYmmAPEvilegrgysskvDvWSlGviLyElltggplfpgadlpa
f GT +Y + + + ++ +k D S+ +++ E+ tg
C50F4.10 205 FRGTVRYA-SLNC-HQLQELNRKDDLESAFYVIVEMITG----------- 241
ftggdevdqliifvlklPfsdelpktridpleelfriikr<-*
+lP+++ +++ r +++
C50F4.10 242 ---------------QLPWKG------LPDGAAVARVKQQ 260